SRR3551022_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551022_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	311197
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGC	2084	0.6696722654781376	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCG	1767	0.5678075302782482	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTC	1640	0.5269973682265574	No Hit
GCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTGC	1425	0.4579092986114905	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTGC	808	0.25964260580918197	Illumina Single End Adapter 2 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTGCT	685	0.22011780319219015	Illumina Single End Adapter 2 (95% over 22bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAAGATGGCT	452	0.14524561612097803	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCT	394	0.1266079043178437	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	388	0.1246798651657953	No Hit
TCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTGC	381	0.12243048615507218	Illumina Single End Adapter 2 (95% over 21bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	327	0.10507813378663677	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCTCGA	30	2.160381E-6	45.000004	41
GTAAGTA	30	2.160381E-6	45.000004	10
GTCGCTA	20	7.025349E-4	45.0	20
GGTACAT	20	7.025349E-4	45.0	8
GTCGAAG	20	7.025349E-4	45.0	1
ATAGCGG	45	3.8198777E-10	45.0	2
AGGCGTC	35	1.2081182E-7	45.0	35
CGACAGG	20	7.025349E-4	45.0	2
ACGGGTA	25	3.884227E-5	45.0	5
CCCGTCT	20	7.025349E-4	45.0	40
TCGGAGT	20	7.025349E-4	45.0	27
ACCTACG	20	7.025349E-4	45.0	35
TACGAAT	80	0.0	45.0	12
CGCTAGG	20	7.025349E-4	45.0	2
TGCGAAG	20	7.025349E-4	45.0	1
TCGCTAT	20	7.025349E-4	45.0	21
CAGGCGT	35	1.2081182E-7	45.0	34
CGAATAT	80	0.0	45.0	14
CTCGCGG	20	7.025349E-4	45.0	2
TTAACGG	20	7.025349E-4	45.0	2