##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551019_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 353988 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.02659412183464 33.0 31.0 34.0 30.0 34.0 2 32.112108320056045 33.0 31.0 34.0 30.0 34.0 3 32.18507972021651 34.0 31.0 34.0 30.0 34.0 4 35.77965919748692 37.0 35.0 37.0 33.0 37.0 5 35.820352667322055 37.0 35.0 37.0 35.0 37.0 6 35.83725154525012 37.0 35.0 37.0 35.0 37.0 7 35.96752149790388 37.0 35.0 37.0 35.0 37.0 8 35.64876492988463 37.0 35.0 37.0 33.0 37.0 9 37.350537306349366 39.0 37.0 39.0 34.0 39.0 10 37.163276721244785 39.0 37.0 39.0 34.0 39.0 11 37.15684147485226 39.0 37.0 39.0 34.0 39.0 12 37.05224470886019 39.0 37.0 39.0 34.0 39.0 13 37.01096364848526 39.0 37.0 39.0 33.0 39.0 14 38.15387527260811 40.0 37.0 41.0 33.0 41.0 15 38.334669536820456 40.0 37.0 41.0 34.0 41.0 16 38.40825395211137 40.0 37.0 41.0 34.0 41.0 17 38.418313615150794 40.0 37.0 41.0 34.0 41.0 18 38.36662824728522 40.0 37.0 41.0 34.0 41.0 19 38.388419946438866 40.0 37.0 41.0 34.0 41.0 20 38.2760771551578 40.0 37.0 41.0 34.0 41.0 21 38.2084759935365 40.0 37.0 41.0 34.0 41.0 22 38.20145315660418 40.0 37.0 41.0 34.0 41.0 23 38.231233827135384 40.0 37.0 41.0 34.0 41.0 24 38.139645976699775 40.0 37.0 41.0 34.0 41.0 25 38.04626993005412 40.0 36.0 41.0 34.0 41.0 26 37.90512390250517 40.0 36.0 41.0 34.0 41.0 27 37.859910505440865 40.0 36.0 41.0 33.0 41.0 28 37.916790964665466 40.0 36.0 41.0 34.0 41.0 29 37.907174819485405 40.0 36.0 41.0 34.0 41.0 30 37.78405482671729 40.0 36.0 41.0 33.0 41.0 31 37.83790693469835 40.0 36.0 41.0 33.0 41.0 32 37.78168468987649 40.0 36.0 41.0 33.0 41.0 33 37.757342056792886 40.0 36.0 41.0 33.0 41.0 34 37.713504412578956 40.0 36.0 41.0 33.0 41.0 35 37.73249658180503 40.0 36.0 41.0 33.0 41.0 36 37.663268246381236 40.0 36.0 41.0 33.0 41.0 37 37.647601048623116 40.0 36.0 41.0 33.0 41.0 38 37.57353356610959 40.0 36.0 41.0 33.0 41.0 39 37.51981140603636 40.0 36.0 41.0 33.0 41.0 40 37.43861656327333 40.0 35.0 41.0 33.0 41.0 41 37.349119179181216 40.0 35.0 41.0 33.0 41.0 42 37.358000836186534 40.0 35.0 41.0 33.0 41.0 43 37.309075448885274 40.0 35.0 41.0 33.0 41.0 44 37.24560719572415 39.0 35.0 41.0 33.0 41.0 45 37.139145959750046 39.0 35.0 41.0 32.0 41.0 46 37.09763890301366 39.0 35.0 41.0 32.0 41.0 47 37.09306247669412 39.0 35.0 41.0 32.0 41.0 48 37.04406929048442 39.0 35.0 41.0 32.0 41.0 49 37.046637174141495 39.0 35.0 41.0 32.0 41.0 50 36.9245115653638 39.0 35.0 41.0 32.0 41.0 51 36.02779472750489 38.0 35.0 40.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 4.0 8 2.0 9 4.0 10 6.0 11 5.0 12 6.0 13 10.0 14 13.0 15 5.0 16 30.0 17 51.0 18 79.0 19 131.0 20 197.0 21 350.0 22 550.0 23 828.0 24 1112.0 25 1531.0 26 1997.0 27 2463.0 28 2875.0 29 3500.0 30 4515.0 31 5917.0 32 7848.0 33 11023.0 34 20661.0 35 28876.0 36 23835.0 37 35661.0 38 66433.0 39 133354.0 40 116.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.79495350124863 21.311456885544143 25.09378849000531 10.799801123201917 2 33.64690328485712 23.664926494683435 23.84120365662113 18.846966563838322 3 31.609828581759835 25.269783156491183 25.84663886911421 17.27374939263478 4 29.70806920008588 26.69892764726488 23.91917240132434 19.673830751324903 5 25.381368859961356 29.178390227917326 24.070307468049766 21.369933444071552 6 26.342135891612145 33.38785495553522 24.655073053323843 15.614936099528798 7 75.66979671627287 8.475146050148592 9.78140501937919 6.073652214199352 8 74.0234132230471 6.8101178571025 11.82299964970564 7.343469270144751 9 66.9954913725889 10.19413087449292 13.888323897985241 8.922053854932937 10 36.90125088986067 26.280551883114683 20.608325705956133 16.20987152106851 11 30.30356961252924 24.740386679774456 24.924856209815022 20.031187497881284 12 28.490513802727772 21.743674926833677 30.42193520684317 19.343876063595374 13 24.444896437167362 24.881069414782424 30.350463857531896 20.323570290518322 14 19.100082488671934 29.047312338271354 29.44789088895669 22.404714284100024 15 18.02716476264732 27.072386634575185 34.94186243601478 19.958586166762714 16 19.98175079381222 25.67685910256845 32.22425618947535 22.117133914143984 17 20.183452546414003 26.083652553193893 27.648959851746387 26.083935048645717 18 20.925568098353615 27.53539668011345 30.38012587997333 21.1589093415596 19 22.64850785902347 27.555171361741078 27.156005288314862 22.640315490920596 20 24.212967671220493 27.961964812366517 27.93569273534696 19.889374781066024 21 23.47706701922099 27.817609636484853 29.267376295241647 19.43794704905251 22 20.64222516017492 26.955716012972193 26.66841813846797 25.733640688384916 23 19.70773020554369 27.171542538165134 29.485462784049176 23.635264472241996 24 22.602461100376285 25.107065776241 29.722758963580688 22.567714159802026 25 20.369899544617333 27.049786998429326 27.65686972439744 24.923443732555906 26 19.258844932596585 27.865916358746624 27.982586980349616 24.892651728307175 27 20.659174887284316 27.25403121009752 28.993920697876764 23.092873204741405 28 17.48816344056861 26.546380103280338 30.64623659559081 25.319219860560242 29 19.06505305264585 25.02288213159768 30.203566222583817 25.708498593172653 30 20.533181915771156 26.22942020633468 29.655525046046762 23.58187283184741 31 19.78739392295784 27.320700136727798 27.928912844503202 24.962993095811157 32 20.082601670113114 26.807405900764998 28.344746149586992 24.7652462795349 33 20.293343277173236 27.20063956970293 29.008045470467923 23.497971682655912 34 17.606529034882538 24.774286133993243 30.531260946698758 27.087923884425464 35 18.686509147202727 23.554470773020554 29.05070228369323 28.70831779608348 36 18.768997819135112 26.600336734578573 30.616574573149375 24.014090873136944 37 18.752613082929365 25.784207374261275 32.210978903239656 23.252200639569704 38 17.649750839011492 27.32239510943874 30.381255861780627 24.646598189769144 39 20.307185554312575 25.044634281388067 30.05299614676204 24.595184017537317 40 20.959467552572402 23.751087607489517 29.810050058194065 25.479394781744013 41 17.15199385289897 24.914968869001207 28.590517192673197 29.342520085426628 42 18.710238765155882 23.571985491033594 31.508130219103474 26.209645524707053 43 20.58516107890663 22.57760150061584 32.401098342316686 24.436139078160842 44 19.401505135767312 24.69264494841633 29.47811790230177 26.427732013514582 45 20.271026136479204 23.29542244369866 28.403222708114402 28.030328711707742 46 20.238821654971357 25.07796874470321 28.75973196831531 25.923477632010123 47 17.77546131507283 23.8895103788829 33.095472162898176 25.239556143146096 48 17.891849441223997 22.23860695842797 33.03417064985254 26.835372950495497 49 19.71309761912833 21.34281388069652 33.62910607139225 25.314982428782894 50 18.41757347706702 21.743674926833677 32.295162547882974 27.543589048216322 51 18.315592618958835 21.337163971660054 29.01878029763721 31.328463111743897 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 276.0 1 382.5 2 489.0 3 779.5 4 1070.0 5 773.0 6 476.0 7 456.0 8 436.0 9 454.5 10 473.0 11 492.0 12 511.0 13 530.0 14 549.0 15 626.5 16 704.0 17 685.0 18 666.0 19 717.5 20 769.0 21 848.0 22 927.0 23 1004.0 24 1081.0 25 1565.0 26 2435.0 27 2821.0 28 3551.5 29 4282.0 30 4841.0 31 5400.0 32 6220.5 33 7041.0 34 7745.0 35 8449.0 36 8930.0 37 9411.0 38 10680.0 39 11949.0 40 14642.5 41 17336.0 42 21642.5 43 25949.0 44 30247.0 45 34545.0 46 39738.5 47 44932.0 48 44117.0 49 43302.0 50 36290.5 51 29279.0 52 25241.5 53 21204.0 54 18531.0 55 15858.0 56 15060.5 57 14263.0 58 13110.5 59 11958.0 60 11892.5 61 11827.0 62 10448.0 63 9069.0 64 7685.0 65 6301.0 66 4845.5 67 3390.0 68 2763.5 69 2137.0 70 1660.5 71 1184.0 72 949.5 73 715.0 74 597.0 75 363.5 76 248.0 77 201.5 78 155.0 79 85.5 80 16.0 81 10.0 82 4.0 83 3.5 84 3.0 85 2.5 86 2.0 87 1.0 88 0.0 89 0.5 90 1.0 91 1.5 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 353988.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.938620816616435 #Duplication Level Percentage of deduplicated Percentage of total 1 69.93529070086605 23.035720220956684 2 12.481106380418984 8.22220860872946 3 4.770144031649852 4.713658964974814 4 2.377189736015729 3.1320540529509846 5 1.4139173385642465 2.32862435405036 6 0.927772560978232 1.8335729154073883 7 0.6770663663785567 1.5611142616879303 8 0.5831685437951571 1.5367014028997645 9 0.47463132169672967 1.4070331019752265 >10 6.160729720184788 42.87548181061165 >50 0.12834853514416433 2.820307375230139 >100 0.06374356778971921 4.117819007717808 >500 0.0034455982589037407 0.697132315989985 >1k 0.0034455982589037407 1.7185716068178023 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC 1948 0.5503011401516436 No Hit CCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC 1530 0.4322180412895353 No Hit TGAATGATACCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCC 1485 0.41950574595749013 No Hit CTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGCT 1094 0.30905002429460887 No Hit TCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC 805 0.22740883871769663 No Hit TGAATGATACGGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATG 604 0.1706272529012283 No Hit ACTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC 527 0.14887510311083993 No Hit TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC 521 0.14718013039990058 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 481 0.13588031232697154 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 418 0.11808309886210831 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 409 0.1155406397956993 No Hit CGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTG 361 0.10198085810818447 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.649909036464513E-4 0.0 0.0 0.3228923014339469 0.0 2 5.649909036464513E-4 0.0 0.0 1.7370645332610144 0.0 3 5.649909036464513E-4 0.0 0.0 2.4246584629987455 0.0 4 5.649909036464513E-4 0.0 0.0 3.302371831813508 0.0 5 5.649909036464513E-4 0.0 0.0 5.771947071652146 0.0 6 5.649909036464513E-4 0.0 0.0 7.037809191272021 0.0 7 5.649909036464513E-4 0.0 0.0 8.276834242968688 0.0 8 5.649909036464513E-4 0.0 0.0 10.215318033379663 0.0 9 5.649909036464513E-4 0.0 0.0 10.911951817575737 0.0 10 5.649909036464513E-4 0.0 0.0 12.386860571544798 0.0 11 5.649909036464513E-4 0.0 0.0 14.919997288043662 0.0 12 5.649909036464513E-4 0.0 0.0 16.618642439856718 0.0 13 5.649909036464513E-4 0.0 0.0 17.559634789879883 0.0 14 5.649909036464513E-4 0.0 0.0 17.84128275534764 0.0 15 5.649909036464513E-4 0.0 0.0 18.46249025390691 0.0 16 5.649909036464513E-4 0.0 0.0 19.68400058759054 0.0 17 5.649909036464513E-4 0.0 0.0 20.983479665977377 0.0 18 5.649909036464513E-4 0.0 0.0 22.382114647954168 0.0 19 5.649909036464513E-4 0.0 0.0 23.131575081641184 0.0 20 5.649909036464513E-4 0.0 0.0 24.068612495338826 0.0 21 5.649909036464513E-4 0.0 0.0 25.062431494852934 0.0 22 5.649909036464513E-4 0.0 0.0 26.061335412499858 0.0 23 5.649909036464513E-4 0.0 0.0 27.03989965761551 0.0 24 5.649909036464513E-4 0.0 0.0 27.768737923319435 0.0 25 5.649909036464513E-4 0.0 0.0 28.46198176209363 0.0 26 5.649909036464513E-4 0.0 0.0 29.069346983513565 0.0 27 8.47486355469677E-4 0.0 0.0 29.663717414149634 0.0 28 8.47486355469677E-4 0.0 0.0 30.272495112828683 0.0 29 8.47486355469677E-4 0.0 0.0 30.919974688407518 0.0 30 8.47486355469677E-4 0.0 0.0 31.6471179814005 0.0 31 8.47486355469677E-4 0.0 0.0 32.33329943387911 0.0 32 0.0011299818072929026 0.0 0.0 33.00705108647751 0.0 33 0.0011299818072929026 0.0 0.0 33.62571612597037 0.0 34 0.0011299818072929026 0.0 0.0 34.24409867001141 0.0 35 0.0011299818072929026 0.0 0.0 34.89016576833113 0.0 36 0.0011299818072929026 0.0 0.0 35.5478151801756 0.0 37 0.0011299818072929026 0.0 0.0 36.15772286066194 0.0 38 0.0011299818072929026 0.0 0.0 36.72751618698939 0.0 39 0.0011299818072929026 0.0 0.0 37.354091099133306 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTATGG 30 2.1612286E-6 45.000004 2 GACGTAA 30 2.1612286E-6 45.000004 40 TCTACGG 25 3.8853163E-5 45.000004 2 GGTATGA 30 2.1612286E-6 45.000004 8 CGAATAT 60 0.0 45.000004 14 CGGGACG 30 2.1612286E-6 45.000004 6 CATAAGG 25 3.8853163E-5 45.000004 2 GCTACGA 65 0.0 45.000004 10 ATCGCTC 25 3.8853163E-5 45.000004 31 GCACTAG 25 3.8853163E-5 45.000004 1 TCACGCA 20 7.026664E-4 45.0 1 GATACGT 20 7.026664E-4 45.0 9 GTACCGT 20 7.026664E-4 45.0 43 GTACCGG 20 7.026664E-4 45.0 2 CTGTACG 20 7.026664E-4 45.0 1 GTTTCGA 20 7.026664E-4 45.0 34 GGCCGAT 40 6.7921064E-9 45.0 8 TTCGTAC 20 7.026664E-4 45.0 32 CGATTCG 20 7.026664E-4 45.0 10 CGCTAAA 20 7.026664E-4 45.0 26 >>END_MODULE