SRR3551015_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551015_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	625384
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTGC	1675	0.2678354419044939	TruSeq Adapter, Index 22 (95% over 24bp)
CCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTGC	1258	0.20115640950200195	TruSeq Adapter, Index 22 (95% over 24bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1200	0.19188210763307023	No Hit
CTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTGCT	1190	0.1902830900694613	Illumina Single End Adapter 2 (95% over 23bp)
GAATCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTC	1008	0.161180970411779	TruSeq Adapter, Index 22 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGC	844	0.13495708236859275	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCG	775	0.12392386117969119	No Hit
CGCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTG	666	0.10649456973635399	Illumina Single End Adapter 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATTTCG	20	7.030818E-4	45.0	40
CGGGTTA	25	3.8887592E-5	45.0	6
GATCGGA	20	7.030818E-4	45.0	31
TCGATCA	45	3.8380676E-10	45.0	17
CCCCGAA	20	7.030818E-4	45.0	24
GCGATAT	45	3.8380676E-10	45.0	9
ATCGGAT	20	7.030818E-4	45.0	32
TACAGCG	20	7.030818E-4	45.0	1
GGTTCGT	25	3.8887592E-5	45.0	9
TCGACGT	20	7.030818E-4	45.0	26
CCGCATG	20	7.030818E-4	45.0	27
ACGACCG	25	3.8887592E-5	45.0	1
CCCGATA	20	7.030818E-4	45.0	28
AGTTGCG	65	0.0	41.53846	1
CACAACG	65	0.0	41.53846	12
CTCGATC	55	6.002665E-11	40.909092	16
GTATGCG	50	1.0804797E-9	40.5	1
ATGTGCG	45	1.925946E-8	40.0	1
GCGTTAG	45	1.925946E-8	40.0	1
GGCGATA	125	0.0	39.600002	8