SRR3551014_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551014_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	559269
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC	1090	0.19489726768335094	No Hit
CTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGCT	772	0.13803733087297884	No Hit
CCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC	759	0.13571286804739757	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	706	0.12623621191233556	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	580	0.10370680298747113	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	580	0.10370680298747113	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAACCGG	20	7.030175E-4	45.000004	2
CGCGCAA	30	2.163495E-6	45.000004	18
TTACGTG	20	7.030175E-4	45.000004	14
CACGTCT	30	2.163495E-6	45.000004	40
CTTACGT	20	7.030175E-4	45.000004	13
TCTATCG	20	7.030175E-4	45.000004	10
GGTACTC	25	3.8882285E-5	45.0	8
CGTCTAT	25	3.8882285E-5	45.0	42
CGTAAGG	115	0.0	43.04348	2
ATGGGCG	70	0.0	41.785717	5
AACGGGC	65	0.0	41.538464	4
TGCAACG	40	3.4539698E-7	39.375004	1
CGCAATC	35	6.242535E-6	38.57143	20
CAATCGG	35	6.242535E-6	38.57143	22
GATAGCG	35	6.242535E-6	38.57143	1
ATAACGG	65	9.094947E-12	38.076927	2
GCGTAAG	65	9.094947E-12	38.076927	1
CGAATAT	95	0.0	37.894737	14
CCGATTG	30	1.13917245E-4	37.500004	11
ACGGGCC	30	1.13917245E-4	37.500004	5