SRR3551013_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551013_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	444234
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC	1251	0.2816083415497238	Illumina Single End Adapter 1 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC	1104	0.24851767311822145	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGCT	827	0.1861631482506967	Illumina Single End Adapter 1 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	652	0.1467694953560511	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCTACGA	60	0.0	45.000004	10
GCGTAAG	30	2.1624837E-6	45.000004	1
TGATCGC	20	7.028608E-4	45.0	37
TCACGAC	50	2.1827873E-11	45.0	25
GTTTACG	20	7.028608E-4	45.0	10
CACGATC	20	7.028608E-4	45.0	8
GCGTTAG	25	3.8869286E-5	45.0	1
CGGATAT	20	7.028608E-4	45.0	10
ACGGATA	20	7.028608E-4	45.0	9
CGATCAT	20	7.028608E-4	45.0	10
CGATATT	20	7.028608E-4	45.0	33
CTAGGGT	50	2.1827873E-11	45.0	4
TAGTCCG	25	3.8869286E-5	45.0	1
TGCACCG	20	7.028608E-4	45.0	1
AATCGTT	25	3.8869286E-5	45.0	22
CTTACGA	20	7.028608E-4	45.0	29
CGGGGTA	110	0.0	40.90909	6
CTAGCGG	55	6.002665E-11	40.90909	2
CGGTCTA	50	1.0786607E-9	40.5	31
CTCACGT	45	1.9237632E-8	40.0	45