SRR3551010_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551010_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	434106
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC	1701	0.39183978106729694	TruSeq Adapter, Index 15 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC	1649	0.37986113990592163	TruSeq Adapter, Index 15 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGCT	1104	0.25431576619535323	TruSeq Adapter, Index 21 (95% over 23bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	712	0.16401524051729302	No Hit
TCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC	572	0.13176505277512865	TruSeq Adapter, Index 15 (95% over 21bp)
ACTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGC	491	0.11310601558144784	TruSeq Adapter, Index 21 (95% over 22bp)
GAGGAGCTGAGAACCCCAGTCTAATAATGTCCATCGACACCTCCTTATCCC	471	0.1084988459039958	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAGGTA	35	1.2095916E-7	45.000004	10
ATTGTCG	30	2.1623691E-6	45.000004	1
TCGTTTG	20	7.028431E-4	45.0	30
TTGGCTA	25	3.8867805E-5	45.0	40
GTCGACG	25	3.8867805E-5	45.0	1
CACGAAG	20	7.028431E-4	45.0	1
TCGATAG	20	7.028431E-4	45.0	1
GTATGCG	25	3.8867805E-5	45.0	1
ATTGGCC	20	7.028431E-4	45.0	12
TTACGGA	20	7.028431E-4	45.0	26
TCGAGAG	25	3.8867805E-5	45.0	1
CCGCATC	20	7.028431E-4	45.0	20
CCCATAT	20	7.028431E-4	45.0	14
CGAATAT	65	0.0	44.999996	14
CGCTAGG	60	3.6379788E-12	41.250004	2
TAGGGCG	110	0.0	40.909092	5
TACTCAC	55	6.002665E-11	40.909092	30
GTGCACG	50	1.0786607E-9	40.5	1
CATAAGG	45	1.9235813E-8	40.0	2
CGTAAGG	125	0.0	39.6	2