SRR3551003_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551003_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	406110
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1970	0.48509024648494253	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTC	1439	0.35433749476742754	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGC	1070	0.2634754130654256	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCG	1060	0.261013026027431	No Hit
GCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGC	957	0.23565043953608628	No Hit
CCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGC	573	0.1410947772770924	No Hit
CGCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTG	557	0.137154958016301	No Hit
CTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGCT	538	0.1324764226441112	Illumina Single End Adapter 2 (95% over 21bp)
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	414	0.10194282337297776	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTT	407	0.10021915244638152	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCACGC	20	7.027892E-4	45.000004	2
TGCGACT	20	7.027892E-4	45.000004	34
TCCGTCG	20	7.027892E-4	45.000004	1
CGTAAGG	45	3.8380676E-10	45.0	2
CGTTATT	145	0.0	41.896553	1
ACGGGCG	65	0.0	41.53846	5
TACGGGA	120	0.0	41.250004	4
CGTTTTT	995	0.0	41.15578	1
TAATACG	55	6.002665E-11	40.909092	4
CGTTAGG	55	6.002665E-11	40.909092	2
CGGGTCA	50	1.0786607E-9	40.5	6
CGCACGG	45	1.9230356E-8	40.0	2
ATGGGCG	125	0.0	39.600002	5
CGGGTCT	80	0.0	39.375004	6
TACGAGG	40	3.4508594E-7	39.375004	2
ACATACG	40	3.4508594E-7	39.375004	17
TAAACGG	35	6.2383133E-6	38.57143	2
ACGGGTA	35	6.2383133E-6	38.57143	5
TGCGAAG	35	6.2383133E-6	38.57143	1
TTAACGG	35	6.2383133E-6	38.57143	2