##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551000_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 561718 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.008870999327065 33.0 31.0 34.0 30.0 34.0 2 32.132329745530676 33.0 31.0 34.0 30.0 34.0 3 32.063953798881286 33.0 31.0 34.0 30.0 34.0 4 35.72084925175978 37.0 35.0 37.0 33.0 37.0 5 32.048380148045815 37.0 35.0 37.0 0.0 37.0 6 33.81113298843904 37.0 35.0 37.0 17.0 37.0 7 35.441799977924866 37.0 35.0 37.0 32.0 37.0 8 35.65010200848113 37.0 35.0 37.0 33.0 37.0 9 37.582285061187285 39.0 37.0 39.0 35.0 39.0 10 37.258068995474595 39.0 37.0 39.0 34.0 39.0 11 37.21817709242004 39.0 37.0 39.0 34.0 39.0 12 37.10518267173208 39.0 37.0 39.0 34.0 39.0 13 37.02317889047529 39.0 37.0 39.0 33.0 39.0 14 38.163863362042875 40.0 37.0 41.0 33.0 41.0 15 38.26783368166945 40.0 37.0 41.0 33.0 41.0 16 38.28351948842658 40.0 37.0 41.0 34.0 41.0 17 38.24283893341499 40.0 37.0 41.0 34.0 41.0 18 38.13802477399692 40.0 37.0 41.0 34.0 41.0 19 38.00126041892907 40.0 37.0 41.0 34.0 41.0 20 37.94015680465999 40.0 36.0 41.0 33.0 41.0 21 37.94056270228121 40.0 36.0 41.0 33.0 41.0 22 37.99820728550625 40.0 36.0 41.0 34.0 41.0 23 37.992216735087716 40.0 36.0 41.0 34.0 41.0 24 37.966652305961354 40.0 36.0 41.0 34.0 41.0 25 37.73913244724221 40.0 35.0 41.0 33.0 41.0 26 37.75815800811083 40.0 35.0 41.0 33.0 41.0 27 37.72360508297758 40.0 35.0 41.0 33.0 41.0 28 37.634848803136094 40.0 35.0 41.0 33.0 41.0 29 37.59627784760325 40.0 35.0 41.0 33.0 41.0 30 37.43008057423832 40.0 35.0 41.0 33.0 41.0 31 37.36061155241598 40.0 35.0 41.0 33.0 41.0 32 37.22484947963213 40.0 35.0 41.0 32.0 41.0 33 37.07572661014958 40.0 35.0 41.0 32.0 41.0 34 36.87941280144129 40.0 35.0 41.0 31.0 41.0 35 36.79151638366582 40.0 35.0 41.0 31.0 41.0 36 36.71333124450347 40.0 35.0 41.0 31.0 41.0 37 36.65247152485767 40.0 35.0 41.0 31.0 41.0 38 36.52070789969344 39.0 35.0 41.0 30.0 41.0 39 36.41434135989945 39.0 35.0 41.0 30.0 41.0 40 36.356422617754816 39.0 35.0 41.0 30.0 41.0 41 36.21328139742718 39.0 35.0 41.0 30.0 41.0 42 36.18720247526339 39.0 35.0 41.0 30.0 41.0 43 36.12440762090586 39.0 35.0 41.0 30.0 41.0 44 36.10994306751787 39.0 35.0 41.0 30.0 41.0 45 36.08824712756223 39.0 35.0 41.0 30.0 41.0 46 35.94742023577667 39.0 35.0 41.0 29.0 41.0 47 35.81128965067881 38.0 35.0 41.0 29.0 41.0 48 35.80367194926992 38.0 35.0 41.0 29.0 41.0 49 35.78586230101225 38.0 35.0 40.0 29.0 41.0 50 35.64755802733756 38.0 35.0 40.0 29.0 41.0 51 34.65219736593807 37.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 13.0 9 12.0 10 24.0 11 21.0 12 10.0 13 13.0 14 25.0 15 25.0 16 43.0 17 83.0 18 196.0 19 356.0 20 703.0 21 1338.0 22 2082.0 23 2755.0 24 3859.0 25 4722.0 26 5966.0 27 6774.0 28 6849.0 29 7389.0 30 8795.0 31 10937.0 32 14634.0 33 21080.0 34 35648.0 35 42933.0 36 43338.0 37 65342.0 38 104292.0 39 171348.0 40 112.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.752495024193635 18.70707365617623 22.03596822604937 13.504463093580766 2 34.53743693454723 26.881994167892074 22.265264776987742 16.315304120572957 3 30.686038189981453 26.503512438625787 27.00447555534984 15.805973816042926 4 27.471791895577496 23.466401290327173 30.978711737918314 18.083095076177013 5 24.447498566896556 35.04249463253804 23.02578874096967 17.48421805959574 6 24.70830559106171 34.89633588384207 26.35130083066592 14.0440576944303 7 75.29703516711233 5.5668502700643385 14.465799564906234 4.670314997917104 8 75.2470100655489 8.020038524668962 11.634663656852727 5.098287752929406 9 69.26945549190164 6.917171961731687 13.310771597135929 10.502600949230754 10 40.30314143395797 24.095008527410553 20.478781167774578 15.123068870856907 11 31.809555684524977 23.029883322236426 25.74708305591062 19.413477937327983 12 27.558668228541723 20.540377912048395 30.508725018603638 21.39222884080624 13 26.269231180058323 21.543016246586365 33.064633855422116 19.1231187179332 14 20.729618776681537 26.75559622444002 31.230261447915147 21.284523550963293 15 19.590435058160857 24.034123884226606 35.872804503327295 20.502636554285246 16 23.39376697916036 24.127587152272138 30.457275714860483 22.02137015370702 17 23.133850081357547 24.827226473070116 29.77134434004251 22.267579105529823 18 23.27805055205637 24.43432469673395 30.41989040764227 21.867734343567413 19 23.36457083447566 25.642582220972088 28.25866359988464 22.734183344667606 20 25.232055942661617 26.09494443831246 29.383605296607907 19.289394322418012 21 23.407652950412842 27.496715433722972 30.33977903503181 18.755852580832375 22 22.12871939300503 22.943006989272195 31.307168365621184 23.621105252101586 23 22.828536739075478 25.339405181959627 30.717548663208227 21.11450941575666 24 23.064954300912557 24.82704844779765 29.43238422126405 22.675613030025744 25 22.63876179862493 27.730106565928097 27.593561181945386 22.03757045350158 26 21.44082974018992 24.521557080243113 29.636757234056947 24.400855945510024 27 23.514468113893447 24.671632384933364 28.379542759890192 23.43435674128299 28 20.58007754780869 25.961069433416768 29.851989788470373 23.606863230304175 29 24.68071167382922 24.139336820255004 28.284299239119985 22.895652266795793 30 22.870194652832918 25.095510558678907 28.46677514339936 23.567519645088815 31 24.058335321282208 25.83324728778497 26.593771251766903 23.514646139165915 32 27.306762467999956 25.699728333434212 26.1597456374907 20.83376356107513 33 24.470641852317353 23.833311376883064 26.820041373073323 24.87600539772626 34 22.83690392688146 24.528678091141817 29.972156847386056 22.662261134590665 35 22.628080282276873 26.153158702409396 27.52680170477001 23.691959310543727 36 23.121210287012346 27.701088446515865 27.715686518858217 21.462014747613573 37 22.090087908879543 26.371061635909832 29.049095809641134 22.489754645569484 38 21.982382619036596 27.211518947229752 26.765209589153276 24.040888844580376 39 23.635169248626536 24.20093356452882 29.048561733823735 23.11533545302091 40 22.950306025443375 23.88120017517687 29.916790987648607 23.251702811731153 41 20.370897852659166 25.595583549040622 29.664351151289438 24.369167447010778 42 21.590192943790303 25.61641250591934 30.070426797788212 22.722967752502147 43 22.761421211355167 23.936031959096912 29.27661210785483 24.02593472169309 44 22.61348220993452 23.5351190454997 28.854158136289026 24.99724060827675 45 22.267045029712417 23.42225102275519 27.547274611103795 26.7634293364286 46 23.895620222246748 25.028929106775998 27.991269640638183 23.084181030339067 47 20.39279496117269 24.943298950719043 31.832342919400837 22.83156316870743 48 20.909424301873894 25.28243709476997 29.387699877874663 24.420438725481468 49 22.10557610758423 23.237104739388805 31.62636767915573 23.03095147387123 50 21.199783521268678 23.547046738755036 30.78039158438932 24.472778155586965 51 20.857974998130736 22.94496526726934 29.139888698599652 27.05717103600027 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 266.0 1 532.5 2 799.0 3 4551.5 4 8304.0 5 5274.0 6 2244.0 7 2092.0 8 1940.0 9 1995.5 10 2051.0 11 2051.5 12 2052.0 13 2003.5 14 1955.0 15 1783.0 16 1611.0 17 1646.5 18 1682.0 19 1697.0 20 1712.0 21 1833.5 22 1955.0 23 2217.0 24 2479.0 25 2816.5 26 3464.0 27 3774.0 28 4935.5 29 6097.0 30 7021.0 31 7945.0 32 8989.0 33 10033.0 34 11577.5 35 13122.0 36 14304.0 37 15486.0 38 16639.5 39 17793.0 40 19615.0 41 21437.0 42 23585.0 43 25733.0 44 29678.0 45 33623.0 46 45976.0 47 58329.0 48 53863.0 49 49397.0 50 49564.5 51 49732.0 52 45238.0 53 40744.0 54 37009.0 55 33274.0 56 31744.0 57 30214.0 58 28633.0 59 27052.0 60 25520.0 61 23988.0 62 21846.5 63 19705.0 64 16914.5 65 14124.0 66 11818.0 67 9512.0 68 8087.5 69 6663.0 70 5720.5 71 4778.0 72 3872.5 73 2967.0 74 2379.5 75 1522.0 76 1252.0 77 898.5 78 545.0 79 421.0 80 297.0 81 175.0 82 53.0 83 42.0 84 31.0 85 20.5 86 10.0 87 7.5 88 5.0 89 5.0 90 5.0 91 3.5 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 561718.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.35517173884452 #Duplication Level Percentage of deduplicated Percentage of total 1 71.76711501713898 26.091057916494954 2 9.611883720650685 6.98883366796119 3 3.899321061729202 4.252814605921761 4 2.2811590167505122 3.317277112703143 5 1.6525830478578571 3.0039970258787756 6 1.276521601543732 2.784489723148034 7 1.187250071225426 3.0213876165449025 8 1.0043488098193698 2.921061877334983 9 0.8688843333296854 2.8429595243452925 >10 6.371042890007332 36.624774150071204 >50 0.04912517120982317 1.2519718191983993 >100 0.021833409426537474 1.495511005927417 >500 0.005954566207237493 1.4341752107506591 >1k 0.002481069253015622 2.8273997582509534 >5k 4.962138506031244E-4 1.1422889854683238 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTC 6332 1.1272560252653467 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4820 0.8580818132942153 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGC 3719 0.6620759883073002 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCG 3697 0.6581594323130112 No Hit GCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGC 1909 0.3398502451408002 No Hit GAACTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCT 1528 0.2720226163306143 No Hit CGCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTG 870 0.15488198704688116 No Hit GAATGACTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCT 852 0.15167753214246293 No Hit GAATGCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTT 772 0.13743551034504858 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTC 709 0.12621991817958478 No Hit CTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGCT 677 0.12052310946061903 No Hit CCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGC 664 0.11820878091853919 No Hit CGTTTCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTT 617 0.10984159311255826 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCAGCTATT 613 0.10912949202268754 No Hit GAATATGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTC 571 0.10165243057904501 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.56050544935359E-4 0.0 0.0 0.12479571599984333 0.0 2 3.56050544935359E-4 0.0 0.0 0.6759619595597791 0.0 3 3.56050544935359E-4 0.0 0.0 0.9796730743896404 0.0 4 3.56050544935359E-4 0.0 0.0 1.552558401190633 0.0 5 3.56050544935359E-4 0.0 0.0 3.4903634920013245 0.0 6 3.56050544935359E-4 0.0 0.0 4.454192317141342 0.0 7 3.56050544935359E-4 0.0 0.0 5.289842946104629 0.0 8 3.56050544935359E-4 0.0 0.0 6.379001563061892 0.0 9 3.56050544935359E-4 0.0 0.0 6.888331867591924 0.0 10 3.56050544935359E-4 0.0 0.0 8.406709416468761 0.0 11 3.56050544935359E-4 0.0 0.0 9.40418501810517 0.0 12 3.56050544935359E-4 0.0 0.0 10.920604288984864 0.0 13 3.56050544935359E-4 0.0 0.0 11.32294140476182 0.0 14 3.56050544935359E-4 0.0 0.0 11.529094670279393 0.0 15 5.340758174030386E-4 0.0 0.0 11.891910175568524 0.0 16 5.340758174030386E-4 0.0 0.0 12.397323924104265 0.0 17 5.340758174030386E-4 0.0 0.0 12.92801726133042 0.0 18 5.340758174030386E-4 0.0 0.0 13.491467248690624 0.0 19 5.340758174030386E-4 0.0 0.0 13.976942166709986 0.0 20 5.340758174030386E-4 0.0 0.0 14.385866217568246 0.0 21 5.340758174030386E-4 0.0 0.0 14.834311878914331 0.0 22 5.340758174030386E-4 0.0 0.0 15.367141519410096 0.0 23 5.340758174030386E-4 0.0 0.0 15.83249958164061 0.0 24 5.340758174030386E-4 0.0 0.0 16.217924296533138 0.0 25 5.340758174030386E-4 0.0 0.0 16.575577068920705 0.0 26 5.340758174030386E-4 0.0 0.0 16.909018404252667 0.0 27 5.340758174030386E-4 0.0 0.0 17.291060638968307 0.0 28 5.340758174030386E-4 0.0 0.0 17.633403237923655 0.0 29 5.340758174030386E-4 0.0 0.0 18.011884967189943 0.0 30 5.340758174030386E-4 0.0 0.0 18.485254166681504 0.0 31 7.12101089870718E-4 0.0 0.0 18.846289419245956 0.0 32 8.901263623383975E-4 0.0 0.0 19.235452664860304 0.0 33 8.901263623383975E-4 0.0 0.0 19.60859363595256 0.0 34 8.901263623383975E-4 0.0 0.0 20.0022075133786 0.0 35 8.901263623383975E-4 0.0 0.0 20.415404170776082 0.0 36 8.901263623383975E-4 0.0 0.0 20.80296518893822 0.0 37 0.001068151634806077 0.0 0.0 21.21277936615882 0.0 38 0.001068151634806077 0.0 0.0 21.658910698962824 0.0 39 0.001068151634806077 0.0 0.0 22.248530401375778 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTACGTC 20 7.0302014E-4 45.000004 16 ATAACCG 20 7.0302014E-4 45.000004 1 TACGTCA 20 7.0302014E-4 45.000004 17 CGTATGG 35 1.2104465E-7 45.0 2 CGGGTCA 25 3.8882506E-5 44.999996 6 TACACGG 50 2.1827873E-11 44.999996 2 TAATACG 195 0.0 43.84615 4 CCGATGA 595 0.0 42.73109 18 CGATGAA 610 0.0 42.418034 19 ACGGGTC 75 0.0 42.0 5 CGAATAT 75 0.0 42.0 14 CGTTTTT 2085 0.0 41.978413 1 CGTTATT 255 0.0 41.47059 1 GATGAAT 655 0.0 40.87786 20 TATGGGT 50 1.0786607E-9 40.499996 4 ATCGAAT 95 0.0 40.263153 43 TACGGCT 660 0.0 40.227276 7 CACGGGT 45 1.9252184E-8 40.000004 4 GCGATGA 45 1.9252184E-8 40.000004 9 AATACGG 215 0.0 39.76744 5 >>END_MODULE