SRR3550995_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550995_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	444120
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGC	10109	2.276186616229848	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTC	10001	2.2518688642709175	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCG	8653	1.948347293524273	No Hit
GCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTCTGC	2555	0.575294965324687	TruSeq Adapter, Index 21 (95% over 23bp)
GAACTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTCT	2173	0.4892821759884716	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCT	1774	0.3994415923624246	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTC	1404	0.31613077546609025	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAAGCGGTTT	1380	0.31072683058632805	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTA	1302	0.29316400972710077	No Hit
CCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTCTGC	1155	0.2600648473385571	TruSeq Adapter, Index 21 (95% over 23bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1032	0.23236962982977571	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTT	801	0.1803566603620643	No Hit
CTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTCTGCT	701	0.15784022336305503	TruSeq Adapter, Index 14 (95% over 22bp)
GAATGATACGGCCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATG	457	0.10290011708547239	No Hit
GAGGAGCTGAGAACCCCAGTCTAATAATGTCCATCGACACCTCCTTATCCC	454	0.10222462397550212	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATACG	40	6.7993824E-9	45.0	4
GTACCGC	25	3.8869264E-5	45.0	31
CGAACGG	20	7.028606E-4	45.0	2
CGACGAA	25	3.8869264E-5	45.0	19
GACGTAG	20	7.028606E-4	45.0	1
TATGCGT	20	7.028606E-4	45.0	11
TCTAGCG	20	7.028606E-4	45.0	1
CGCTCGT	20	7.028606E-4	45.0	41
CGGCTAT	25	3.8869264E-5	45.0	31
CGGTCTA	45	3.8380676E-10	45.0	31
CGTTTGA	20	7.028606E-4	45.0	34
TTCGAAT	25	3.8869264E-5	45.0	43
TAAGACG	20	7.028606E-4	45.0	1
TACCGAT	20	7.028606E-4	45.0	1
TCGACAC	85	0.0	42.35294	34
ATCGACA	85	0.0	42.35294	33
CGATGAA	675	0.0	41.333332	19
ACGTAGG	60	3.6379788E-12	41.250004	2
AGTACGG	60	3.6379788E-12	41.250004	2
TACGGCT	1330	0.0	40.432327	7