SRR3550985_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550985_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	585997
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTC	7757	1.323726913277713	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGC	7024	1.1986409486737988	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCG	5814	0.9921552499415527	No Hit
GCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC	2223	0.37935347791882895	No Hit
GAACTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCT	1909	0.3257695858511221	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCT	1352	0.2307179046991708	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTC	1060	0.18088829806295936	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	972	0.16587115633697783	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTTTCCGAATCGTA	903	0.15409635202910596	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTTCCGAAT	680	0.11604154970076638	No Hit
CCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC	612	0.10443739473068976	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	35	1.2105556E-7	45.000004	25
TTTCGAC	30	2.1636733E-6	45.000004	24
ATTACGG	30	2.1636733E-6	45.000004	2
CGGTCTA	35	1.2105556E-7	45.000004	31
TCGACGT	30	2.1636733E-6	45.000004	26
TTCGACG	30	2.1636733E-6	45.000004	25
TTTAGCG	25	3.8884573E-5	45.0	1
TTTACGG	40	6.8048394E-9	45.0	2
GCGAATG	25	3.8884573E-5	45.0	1
TAGCGTA	20	7.030453E-4	45.0	25
TACGGGT	95	0.0	42.63158	4
TACGGCT	820	0.0	42.530487	7
GCGTTAG	65	0.0	41.53846	1
CGGCGAA	60	3.6379788E-12	41.250004	31
TTGTACG	55	6.002665E-11	40.909092	1
GCCGATT	55	6.002665E-11	40.909092	9
ACGGGTC	105	0.0	40.714283	5
TTACGGG	150	0.0	40.5	3
CGTTAGG	80	0.0	39.375	2
ACGGTCT	40	3.4543518E-7	39.375	30