##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3550985_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 585997 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.0267185668186 33.0 31.0 34.0 30.0 34.0 2 32.10553466997271 33.0 31.0 34.0 30.0 34.0 3 32.00574746969694 33.0 31.0 34.0 30.0 34.0 4 35.72109242880083 37.0 35.0 37.0 33.0 37.0 5 33.46138290810362 37.0 35.0 37.0 30.0 37.0 6 34.49818173130579 37.0 35.0 37.0 30.0 37.0 7 35.62361752705219 37.0 35.0 37.0 32.0 37.0 8 35.47867821848917 37.0 35.0 37.0 33.0 37.0 9 37.42154140720857 39.0 37.0 39.0 34.0 39.0 10 37.124852175011135 39.0 37.0 39.0 34.0 39.0 11 37.023855070930395 39.0 37.0 39.0 33.0 39.0 12 36.98860915670217 39.0 37.0 39.0 33.0 39.0 13 36.991912927881884 39.0 37.0 39.0 33.0 39.0 14 38.169065711940505 40.0 37.0 41.0 33.0 41.0 15 38.20131673029043 40.0 37.0 41.0 33.0 41.0 16 38.1169135678169 40.0 37.0 41.0 34.0 41.0 17 37.99010575139463 40.0 37.0 41.0 33.0 41.0 18 37.862582914247 40.0 36.0 41.0 33.0 41.0 19 37.74922397213638 39.0 36.0 41.0 33.0 41.0 20 37.92841430928827 40.0 36.0 41.0 33.0 41.0 21 37.96233939764197 40.0 36.0 41.0 34.0 41.0 22 38.097256470596264 40.0 37.0 41.0 34.0 41.0 23 38.173241501236355 40.0 37.0 41.0 34.0 41.0 24 38.03259743650565 40.0 36.0 41.0 34.0 41.0 25 37.762227451676374 40.0 36.0 41.0 33.0 41.0 26 37.79952969042504 40.0 36.0 41.0 33.0 41.0 27 37.883318515282504 40.0 36.0 41.0 34.0 41.0 28 37.75715063387697 40.0 36.0 41.0 33.0 41.0 29 37.78372414875844 40.0 36.0 41.0 33.0 41.0 30 37.590898929516705 40.0 36.0 41.0 33.0 41.0 31 37.532325250811866 40.0 36.0 41.0 33.0 41.0 32 37.48596153222628 40.0 36.0 41.0 33.0 41.0 33 37.448592740235874 40.0 36.0 41.0 33.0 41.0 34 37.298723372303954 40.0 36.0 41.0 33.0 41.0 35 37.24911902279363 40.0 35.0 41.0 32.0 41.0 36 37.24973677339645 40.0 35.0 41.0 33.0 41.0 37 37.26040406350203 40.0 35.0 41.0 33.0 41.0 38 37.12263544011317 40.0 35.0 41.0 32.0 41.0 39 36.997962446906726 40.0 35.0 41.0 32.0 41.0 40 36.88058300639764 39.0 35.0 41.0 31.0 41.0 41 36.72581088299087 39.0 35.0 41.0 31.0 41.0 42 36.788988680829426 39.0 35.0 41.0 31.0 41.0 43 36.786420408295605 39.0 35.0 41.0 32.0 41.0 44 36.77804664528999 39.0 35.0 41.0 31.0 41.0 45 36.728423524352515 39.0 35.0 41.0 31.0 41.0 46 36.60641436730905 39.0 35.0 41.0 31.0 41.0 47 36.48120553518192 39.0 35.0 41.0 31.0 41.0 48 36.438679720203346 39.0 35.0 41.0 31.0 41.0 49 36.37678691187839 39.0 35.0 41.0 31.0 41.0 50 36.30263294863284 39.0 35.0 41.0 31.0 41.0 51 35.03738756341756 37.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 3.0 8 15.0 9 26.0 10 27.0 11 26.0 12 17.0 13 15.0 14 18.0 15 22.0 16 52.0 17 80.0 18 173.0 19 347.0 20 667.0 21 1177.0 22 1736.0 23 2189.0 24 2762.0 25 3423.0 26 4201.0 27 4820.0 28 5359.0 29 6411.0 30 8085.0 31 10569.0 32 14586.0 33 21931.0 34 39639.0 35 46554.0 36 43888.0 37 67932.0 38 116061.0 39 183129.0 40 57.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.954330824219234 18.501118606409246 21.622806942697657 13.921743626673857 2 29.009022230489233 29.25356273154982 24.995520454882875 16.74189458307807 3 30.132918769208715 28.94724717020736 25.2315284890537 15.688305571530229 4 27.38648832673205 24.216676877185378 30.209881620554373 18.186953175528203 5 27.406624948591883 31.922518374667447 22.170250018344802 18.500606658395863 6 25.334259390406434 36.700870482272094 23.611724974701236 14.353145152620236 7 77.71746271738593 5.773749694964309 12.408766597781218 4.100020989868549 8 78.48845642554484 8.654651815623629 8.295946907578026 4.560944851253504 9 72.7592462077451 6.435698476272063 9.90312237093364 10.901932945049207 10 43.48827724374015 22.586975701240792 17.77858931018418 16.14615774483487 11 33.34607515055538 24.30882751959481 23.95063455956259 18.39446277028722 12 28.316527217716132 22.935953597032068 27.318740539627335 21.428778645624465 13 25.980679081974824 23.84909820357442 30.751010670703096 19.419212043747663 14 21.96325237159917 28.724037836371174 27.827958163608347 21.484751628421307 15 20.91222310011826 24.504391660708162 34.676798686682694 19.906586552490882 16 24.00131741288778 25.9277777872583 28.03888074512327 22.032024054730655 17 24.531524905417605 25.563953399078837 28.449292402520832 21.45522929298273 18 24.45097841797825 24.85575864722857 29.09383495137347 21.599427983419712 19 24.921458642279738 27.10713536076123 25.62555781002292 22.34584818693611 20 27.37061793831709 26.767884477224285 27.679834538402076 18.18166304605655 21 25.446546654675707 29.62353049588991 26.61361747585739 18.316305373576995 22 24.077768316220048 24.78545112005693 28.306970854799594 22.829809708923424 23 23.903194043655514 27.87949426362251 28.291953713073614 19.925357979648357 24 24.496200492493987 24.919752148901786 27.55867350856745 23.025373850036775 25 22.666327643315583 29.350832854093113 25.894501166388224 22.088338336203087 26 21.49072435524414 25.97317051111183 29.251514939496275 23.284590194147754 27 23.00472528016355 27.124029645202963 27.09689640049352 22.77434867413997 28 19.78610812000744 27.04075276835888 30.50988315639841 22.663255955235265 29 22.424688180997514 25.101323044315926 29.687012049549743 22.786976725136817 30 21.786630306981095 26.55389020762905 30.925414293929833 20.734065191460026 31 24.96019604195926 24.567361266354606 28.43103292337674 22.041409768309393 32 25.432553408976492 26.152693614472426 26.648771239443203 21.76598173710787 33 24.107973249009806 24.991424870775788 26.168734652225183 24.73186722798922 34 24.86685085418526 25.49449911859617 28.540077850227902 21.09857217699067 35 21.351986443616607 27.943829063971314 28.151168009392542 22.55301648301954 36 21.076046464401696 30.12745799039927 28.495026425049957 20.30146912014908 37 22.131853917340873 27.670278175485542 29.268409223938008 20.92945868323558 38 21.259494502531584 28.44502616907595 26.00986011873781 24.28561920965466 39 24.6142898342483 26.180509456533052 25.855763766708705 23.349436942509943 40 22.988684242410798 26.43187593110545 27.50014078570368 23.07929904078007 41 21.58424019235593 29.023527424201827 26.040918298216543 23.35131408522569 42 21.031848285912726 27.791439205320163 28.764652378766442 22.412060130000665 43 22.68441647312188 26.477780602972373 26.524367872190474 24.31343505171528 44 21.555571103606333 24.637668793526245 28.181714240857886 25.625045862009532 45 21.541065909893735 24.522139191838864 27.627786490374522 26.309008407892875 46 24.670604115720728 26.763959542454995 26.62778137089439 21.937654970929884 47 20.594815331819106 26.12436582439842 30.887018192925904 22.393800650856573 48 21.53492253373311 25.809517796166194 28.504241489290898 24.1513181808098 49 21.425195009530764 23.98476442712164 31.60220956762577 22.987830995721822 50 21.668199666551192 24.55541581270894 29.351686100782086 24.42469841995778 51 20.74464545040333 24.008655334412975 27.998266202728 27.2484330124557 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 83.0 1 399.0 2 715.0 3 1602.5 4 2490.0 5 1798.5 6 1107.0 7 1042.0 8 977.0 9 998.5 10 1020.0 11 998.0 12 976.0 13 1002.0 14 1028.0 15 1036.5 16 1045.0 17 1100.5 18 1156.0 19 1227.5 20 1299.0 21 1540.0 22 1781.0 23 2073.0 24 2365.0 25 2719.0 26 3895.5 27 4718.0 28 5518.5 29 6319.0 30 7250.5 31 8182.0 32 9506.0 33 10830.0 34 12601.5 35 14373.0 36 16216.0 37 18059.0 38 19650.0 39 21241.0 40 24005.5 41 26770.0 42 30902.0 43 35034.0 44 51734.0 45 68434.0 46 59530.5 47 50627.0 48 51198.5 49 51770.0 50 48036.5 51 44303.0 52 40949.0 53 37595.0 54 35295.5 55 32996.0 56 31355.5 57 29715.0 58 27976.5 59 26238.0 60 24818.0 61 23398.0 62 21853.0 63 20308.0 64 17283.5 65 14259.0 66 11352.0 67 8445.0 68 6907.5 69 5370.0 70 4318.0 71 3266.0 72 2625.0 73 1984.0 74 1650.5 75 1051.0 76 785.0 77 527.0 78 269.0 79 212.0 80 155.0 81 111.0 82 67.0 83 46.5 84 26.0 85 17.0 86 8.0 87 7.5 88 7.0 89 4.5 90 2.0 91 3.5 92 5.0 93 4.0 94 3.0 95 2.5 96 2.0 97 2.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 585997.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.68030052427648 #Duplication Level Percentage of deduplicated Percentage of total 1 71.1079370880945 23.23828753700274 2 8.703419977498825 5.688607609073066 3 3.3849654543807213 3.318650649403683 4 2.021770323206734 2.6428824701383866 5 1.5555062789641094 2.5417206331973072 6 1.3120302350841297 2.572652542769189 7 1.2413477284999577 2.8397331775754613 8 1.1094861559474745 2.90066728031102 9 1.0352011559516103 3.044761639161933 >10 8.4643800212365 44.03121496588789 >50 0.04193808599047476 0.9162121760191861 >100 0.015202556171535039 0.8966818491550926 >500 0.0031453564492831113 0.7185104461896176 >1k 0.0020969042995220744 1.1211092894289123 >5k 0.0015726782246415557 3.5283077346864986 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTC 7757 1.323726913277713 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGC 7024 1.1986409486737988 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCG 5814 0.9921552499415527 No Hit GCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC 2223 0.37935347791882895 No Hit GAACTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCT 1909 0.3257695858511221 No Hit GAATGACTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCT 1352 0.2307179046991708 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTC 1060 0.18088829806295936 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 972 0.16587115633697783 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTTTCCGAATCGTA 903 0.15409635202910596 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTTCCGAAT 680 0.11604154970076638 No Hit CCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC 612 0.10443739473068976 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.09112674638266066 0.0 2 0.0 0.0 0.0 0.6706518975353116 0.0 3 0.0 0.0 0.0 0.8349872098321323 0.0 4 0.0 0.0 0.0 1.3810650907769153 0.0 5 0.0 0.0 0.0 3.3165698800505803 0.0 6 0.0 0.0 0.0 4.019474502429193 0.0 7 0.0 0.0 0.0 4.714529255269225 0.0 8 0.0 0.0 0.0 5.616922953530479 0.0 9 0.0 0.0 0.0 5.9333068258028625 0.0 10 0.0 0.0 0.0 7.602769297453741 0.0 11 0.0 0.0 0.0 8.358404565211085 0.0 12 0.0 0.0 0.0 10.36063324556269 0.0 13 0.0 0.0 0.0 10.735720490036638 0.0 14 0.0 0.0 0.0 10.885038660607478 0.0 15 0.0 0.0 0.0 11.229238374940486 0.0 16 0.0 0.0 0.0 11.650912888632536 0.0 17 1.706493377952447E-4 0.0 0.0 12.09033493345529 0.0 18 1.706493377952447E-4 0.0 0.0 12.575320351469376 0.0 19 1.706493377952447E-4 0.0 0.0 13.016790188345674 0.0 20 1.706493377952447E-4 0.0 0.0 13.345972760952701 0.0 21 1.706493377952447E-4 0.0 0.0 13.737612991192787 0.0 22 1.706493377952447E-4 0.0 0.0 14.183349061513967 0.0 23 1.706493377952447E-4 0.0 0.0 14.554170072543034 0.0 24 1.706493377952447E-4 0.0 0.0 14.870212646139827 0.0 25 1.706493377952447E-4 0.0 0.0 15.163900156485443 0.0 26 1.706493377952447E-4 0.0 0.0 15.449737797292478 0.0 27 1.706493377952447E-4 0.0 0.0 15.76902270830738 0.0 28 1.706493377952447E-4 0.0 0.0 16.051788661034102 0.0 29 1.706493377952447E-4 0.0 0.0 16.35469123562066 0.0 30 1.706493377952447E-4 0.0 0.0 16.75366938738594 0.0 31 1.706493377952447E-4 0.0 0.0 17.070735857009506 0.0 32 1.706493377952447E-4 0.0 0.0 17.38541323590394 0.0 33 1.706493377952447E-4 0.0 0.0 17.694459186651127 0.0 34 1.706493377952447E-4 0.0 0.0 17.992242281103827 0.0 35 1.706493377952447E-4 0.0 0.0 18.31596407490141 0.0 36 1.706493377952447E-4 0.0 0.0 18.63030015512025 0.0 37 1.706493377952447E-4 0.0 0.0 18.93422662573358 0.0 38 3.412986755904894E-4 0.0 0.0 19.277743742715405 0.0 39 3.412986755904894E-4 0.0 0.0 19.638496442814553 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGAC 35 1.2105556E-7 45.000004 25 TTTCGAC 30 2.1636733E-6 45.000004 24 ATTACGG 30 2.1636733E-6 45.000004 2 CGGTCTA 35 1.2105556E-7 45.000004 31 TCGACGT 30 2.1636733E-6 45.000004 26 TTCGACG 30 2.1636733E-6 45.000004 25 TTTAGCG 25 3.8884573E-5 45.0 1 TTTACGG 40 6.8048394E-9 45.0 2 GCGAATG 25 3.8884573E-5 45.0 1 TAGCGTA 20 7.030453E-4 45.0 25 TACGGGT 95 0.0 42.63158 4 TACGGCT 820 0.0 42.530487 7 GCGTTAG 65 0.0 41.53846 1 CGGCGAA 60 3.6379788E-12 41.250004 31 TTGTACG 55 6.002665E-11 40.909092 1 GCCGATT 55 6.002665E-11 40.909092 9 ACGGGTC 105 0.0 40.714283 5 TTACGGG 150 0.0 40.5 3 CGTTAGG 80 0.0 39.375 2 ACGGTCT 40 3.4543518E-7 39.375 30 >>END_MODULE