SRR3550979_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550979_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	418851
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTC	6316	1.5079348025908974	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGC	5608	1.3389009456823548	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCG	5167	1.2336129076927116	No Hit
GCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGC	2015	0.4810779967100473	No Hit
GAACTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCT	1320	0.31514786881253715	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCT	1195	0.28530432062953176	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTC	898	0.2143960501467109	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	736	0.17571881170153586	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCCGTGTATTCGTA	733	0.17500256654514373	No Hit
CCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGC	721	0.1721375859195752	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCCGTGTATT	563	0.13441534101625638	No Hit
CTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGCT	458	0.10934676054253183	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCTACG	20	7.0281466E-4	45.0	1
GATCGCG	20	7.0281466E-4	45.0	21
CGTTATT	25	3.886545E-5	45.0	1
CACGTTG	20	7.0281466E-4	45.0	27
CACGTAG	25	3.886545E-5	45.0	1
GACCTAA	25	3.886545E-5	45.0	9
TCAACGG	25	3.886545E-5	45.0	2
CTAGCGG	55	1.8189894E-12	45.0	2
TAATACG	80	0.0	42.1875	4
CGGGTGC	40	3.451205E-7	39.375	6
TACGGCT	795	0.0	39.339622	7
TCTACGG	35	6.2387826E-6	38.57143	2
CGCTAGG	35	6.2387826E-6	38.57143	2
ATAACGG	35	6.2387826E-6	38.57143	2
TATGGGT	135	0.0	38.333332	4
CGATGAA	335	0.0	37.611942	19
CGTTTTT	545	0.0	37.56881	1
TCGATAG	30	1.13868366E-4	37.499996	1
TATCGAG	30	1.13868366E-4	37.499996	1
GTACGGA	30	1.13868366E-4	37.499996	17