SRR3550974_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550974_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	371065
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGC	12455	3.356554781507283	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTC	11552	3.1132011911659685	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCG	11065	2.9819573390106857	No Hit
GCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGC	3801	1.0243488337622788	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCCGTGTATT	2889	0.7785697923544392	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCT	2622	0.7066147440475388	No Hit
GAACTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCT	2032	0.5476129519086953	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCCGTGTATTCGTA	2000	0.5389891258943851	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTC	1900	0.5120396695996658	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1395	0.3759449153113336	No Hit
CCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGC	1061	0.2859337312869713	No Hit
CTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGCT	817	0.2201770579278563	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCCGTGTATTCGT	581	0.15657634107231888	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTT	563	0.1517254389392694	No Hit
GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCCCGTGTAT	509	0.137172732540121	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATG	498	0.1342082923477019	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTAT	486	0.13097435759233558	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTACTC	30	2.1615142E-6	45.000004	9
TCTATGC	30	2.1615142E-6	45.000004	30
CGACGTC	20	7.027106E-4	45.0	45
GCGAACC	25	3.885683E-5	45.0	33
TCGATTA	20	7.027106E-4	45.0	41
TACGGGA	45	3.8380676E-10	45.0	4
CGACAGG	25	3.885683E-5	45.0	2
CCGTATT	25	3.885683E-5	45.0	41
CACTAGA	20	7.027106E-4	45.0	20
CGAATGC	55	1.8189894E-12	45.0	45
ACTCGTT	20	7.027106E-4	45.0	12
CGGTGAT	25	3.885683E-5	45.0	31
TGCTCGG	20	7.027106E-4	45.0	2
CTATTAG	20	7.027106E-4	45.0	1
ATTGCGG	35	1.2089549E-7	45.0	2
TATCGGG	20	7.027106E-4	45.0	3
TACGGCT	1370	0.0	43.029198	7
CCGATGA	700	0.0	42.75	18
CGATGAA	700	0.0	42.75	19
ACGGCTG	1385	0.0	42.72563	8