##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3550974_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 371065 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.229951625725953 31.0 31.0 33.0 28.0 34.0 2 31.14723296457494 31.0 31.0 34.0 28.0 34.0 3 31.09432579197715 31.0 31.0 34.0 28.0 34.0 4 35.022435422365355 35.0 35.0 37.0 32.0 37.0 5 35.21436945009634 35.0 35.0 37.0 33.0 37.0 6 35.12360907118699 36.0 35.0 37.0 33.0 37.0 7 35.433519733739374 37.0 35.0 37.0 33.0 37.0 8 34.82547801598103 37.0 35.0 37.0 32.0 37.0 9 36.62175090617547 39.0 35.0 39.0 32.0 39.0 10 36.300041771657256 37.0 35.0 39.0 32.0 39.0 11 36.544756309541455 38.0 35.0 39.0 32.0 39.0 12 36.67205476129519 39.0 35.0 39.0 32.0 39.0 13 36.59608963389164 39.0 35.0 39.0 32.0 39.0 14 37.651249781035666 39.0 36.0 41.0 32.0 41.0 15 37.598436931534906 39.0 36.0 41.0 32.0 41.0 16 37.8552032662741 39.0 37.0 41.0 33.0 41.0 17 37.53502755581906 39.0 36.0 41.0 32.0 41.0 18 37.50444531281581 39.0 36.0 41.0 32.0 41.0 19 37.42398232115667 39.0 36.0 40.0 32.0 41.0 20 37.22382870925579 39.0 35.0 41.0 31.0 41.0 21 37.43357632759759 39.0 36.0 40.0 32.0 41.0 22 37.53337824909382 39.0 36.0 41.0 32.0 41.0 23 37.56742349723094 39.0 36.0 41.0 33.0 41.0 24 37.4185627854958 39.0 35.0 41.0 32.0 41.0 25 37.34682333283926 39.0 35.0 41.0 32.0 41.0 26 37.29511810599221 39.0 35.0 41.0 32.0 41.0 27 37.306479996766065 39.0 36.0 41.0 32.0 41.0 28 37.15252044789997 39.0 35.0 41.0 31.0 41.0 29 37.160074380499374 39.0 35.0 41.0 31.0 41.0 30 36.9445865279668 39.0 35.0 41.0 31.0 41.0 31 36.91672348510369 39.0 35.0 41.0 31.0 41.0 32 36.652432862167004 39.0 35.0 41.0 30.0 41.0 33 36.689986929513694 39.0 35.0 41.0 30.0 41.0 34 36.50706210502203 39.0 35.0 41.0 30.0 41.0 35 36.43556250252651 39.0 35.0 41.0 30.0 41.0 36 36.368172692115934 39.0 35.0 41.0 30.0 41.0 37 36.41045638904235 39.0 35.0 41.0 30.0 41.0 38 36.14598520474849 39.0 35.0 41.0 30.0 41.0 39 36.04216242437309 39.0 35.0 40.0 30.0 41.0 40 36.000385377225015 39.0 35.0 40.0 30.0 41.0 41 35.76060797973401 38.0 35.0 40.0 27.0 41.0 42 35.92493498443669 39.0 35.0 40.0 29.0 41.0 43 35.999857167881636 39.0 35.0 40.0 30.0 41.0 44 36.12792098419414 39.0 35.0 40.0 30.0 41.0 45 36.041461738509426 39.0 35.0 40.0 29.0 41.0 46 35.923733038685945 39.0 35.0 40.0 29.0 41.0 47 35.82690903211028 38.0 35.0 40.0 29.0 41.0 48 35.769183296726986 38.0 35.0 40.0 28.0 41.0 49 35.80498025952326 38.0 35.0 40.0 28.0 41.0 50 35.62778219449422 38.0 35.0 40.0 28.0 41.0 51 34.5180682629728 37.0 33.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 5.0 9 8.0 10 8.0 11 4.0 12 4.0 13 8.0 14 5.0 15 16.0 16 23.0 17 53.0 18 107.0 19 276.0 20 685.0 21 1317.0 22 1868.0 23 2204.0 24 2591.0 25 3175.0 26 3804.0 27 4258.0 28 4666.0 29 5447.0 30 6788.0 31 8864.0 32 11983.0 33 15960.0 34 25347.0 35 28772.0 36 31464.0 37 46745.0 38 81034.0 39 83566.0 40 10.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 51.72894236858772 17.366229636317087 19.877649468421975 11.027178526673225 2 28.285610337811434 36.076159163488875 20.281621818279817 15.356608680419873 3 27.63046905528681 36.09475428833223 22.672038591621412 13.602738064759542 4 26.011884710225967 20.30129492137496 37.45677980946734 16.230040558931723 5 34.751323892040475 24.34155740907927 21.326182744263132 19.580935954617114 6 22.476385538921754 41.04698637704984 23.455459286108905 13.021168797919502 7 67.35477611739184 5.242208238448789 22.294746203495343 5.108269440664034 8 64.24211391535177 16.741541239405493 12.361176613261827 6.65516823198092 9 59.05596054599599 7.208171075148559 12.666513953080996 21.06935442577446 10 41.25853960896339 20.940266530122756 21.470092840876937 16.331101020036918 11 32.89720129896379 21.404875156643715 25.34111274305041 20.356810801342082 12 25.594707126783717 18.708582054357052 29.882096128710607 25.814614690148623 13 24.658213520542223 20.68236023338229 36.669316696535645 17.990109549539838 14 20.68828911376713 30.692196784929866 26.415318070957916 22.204196030345088 15 16.049209707194155 22.772560063600718 39.22601161521566 21.952218613989462 16 18.00520124506488 24.629916591432767 27.777882581218922 29.58699958228343 17 18.876477167073155 25.66450621858704 31.579103391589076 23.87991322275073 18 18.235888590947678 24.709956476628083 30.829908506595878 26.22424642582836 19 19.255925511702802 26.201878377103743 26.986377049843018 27.55581906135044 20 23.686685621117594 24.873270181774082 33.1650788945333 18.27496530257502 21 21.470901324565776 31.512538234541122 27.888105857464325 19.12845458342878 22 19.042216323285675 22.02255669491868 30.896473663643835 28.038753318151805 23 21.12379232748979 29.268726503442792 28.9369786964548 20.670502472612615 24 23.253607858461457 23.86077910878148 26.36788702787921 26.51772600487785 25 18.23400212900705 33.897565116623774 24.846320725479362 23.02211202888982 26 18.50807809952434 23.16117122337057 30.455580558662227 27.87517011844286 27 24.302750192014877 25.925915944645816 25.015832805573147 24.75550105776616 28 17.962621104119226 25.142225755595383 31.86368965006131 25.031463490224088 29 21.64903723067387 21.171762359694394 28.23790980016978 28.941290609461955 30 21.032164176087747 26.480535755191138 27.30896204169081 25.178338027030307 31 26.59183700968833 22.23437942139517 24.044574400711465 27.129209168205033 32 25.005861506744104 27.7657553258863 26.4123536307655 20.8160295366041 33 25.76826162532171 21.09899882769865 25.082936951746998 28.04980259523264 34 23.115357147669545 22.22333014431434 29.397814399094496 25.263498308921616 35 20.344414051446513 24.591109374368372 26.194063034778274 28.87041353940684 36 23.821702397154137 22.710576314122864 28.008030937975825 25.45969035074717 37 18.76733186907954 22.8941021114899 34.022610593831274 24.315955425599288 38 27.163434977699325 23.85215528276717 24.4827725600636 24.501637179469903 39 22.631344912616388 20.90604072062846 34.31905461307318 22.14355975368197 40 23.9214153854446 23.816312505895194 29.878862193955236 22.38340991470497 41 19.057577513373666 24.74957217738132 31.833775753574173 24.35907455567084 42 19.72080363278671 25.505773921011144 32.06608006683465 22.707342379367496 43 23.784242652904478 20.785307156428118 29.865656960370824 25.56479323029658 44 22.09181679759611 20.586959158098985 30.48603344427526 26.835190600029645 45 21.280638163125058 19.938016250522146 28.02689555738213 30.754450028970666 46 27.130556641019766 23.94243596135448 26.959427593548302 21.967579804077452 47 18.841442873890017 21.515367927452065 37.271367550159674 22.37182164849824 48 21.486262514653767 24.083381617775864 27.891070297656746 26.53928556991363 49 19.997574548933475 20.219638068801963 35.87996712166332 23.902820260601242 50 22.45078355544177 19.13680891488014 32.10650425127673 26.30590327840136 51 20.163852694271895 19.667713203886112 27.91721127026262 32.251222831579376 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 101.0 1 237.5 2 374.0 3 1466.0 4 2558.0 5 1800.5 6 1043.0 7 986.5 8 930.0 9 923.5 10 917.0 11 920.5 12 924.0 13 908.0 14 892.0 15 863.0 16 834.0 17 785.0 18 736.0 19 738.5 20 741.0 21 847.5 22 954.0 23 917.5 24 881.0 25 1070.5 26 1572.5 27 1885.0 28 2553.5 29 3222.0 30 3659.5 31 4097.0 32 4623.5 33 5150.0 34 5977.5 35 6805.0 36 7212.0 37 7619.0 38 8719.0 39 9819.0 40 11589.5 41 13360.0 42 14822.5 43 16285.0 44 18183.0 45 20081.0 46 46129.0 47 72177.0 48 55338.0 49 38499.0 50 38311.0 51 38123.0 52 32025.0 53 25927.0 54 22916.0 55 19905.0 56 18417.5 57 16930.0 58 15763.5 59 14597.0 60 13944.5 61 13292.0 62 11819.5 63 10347.0 64 8732.0 65 7117.0 66 5780.0 67 4443.0 68 3862.0 69 3281.0 70 2594.5 71 1908.0 72 1624.5 73 1341.0 74 1096.0 75 662.0 76 473.0 77 343.0 78 213.0 79 160.5 80 108.0 81 75.5 82 43.0 83 28.0 84 13.0 85 9.0 86 5.0 87 2.5 88 0.0 89 1.0 90 2.0 91 2.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 371065.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.2586655449841 #Duplication Level Percentage of deduplicated Percentage of total 1 73.82914855148854 24.554589591449048 2 9.995120312237194 6.6484872709314775 3 3.61039338020689 3.6023059775437667 4 1.8596159275939268 2.4739337671188713 5 1.2373657671829368 2.0576567103774974 6 0.9971628200259014 1.9898582835080776 7 0.7998663100560037 1.8621740260797226 8 0.7406159990106242 1.9705519846686903 9 0.6700355964820672 2.0056040825967894 >10 6.143865650776737 34.30559047246801 >50 0.07138369635172025 1.6046936723725467 >100 0.03325831307296057 2.0209751680804886 >500 0.003244713470532739 0.6663741376530246 >1k 0.006489426941065478 4.775231674679569 >5k 0.0 0.0 >10k+ 0.002433535102899554 9.46197318047242 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGC 12455 3.356554781507283 No Hit GAATCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTC 11552 3.1132011911659685 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCG 11065 2.9819573390106857 No Hit GCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGC 3801 1.0243488337622788 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCCGTGTATT 2889 0.7785697923544392 No Hit GAATGACTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCT 2622 0.7066147440475388 No Hit GAACTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCT 2032 0.5476129519086953 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCCGTGTATTCGTA 2000 0.5389891258943851 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTC 1900 0.5120396695996658 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1395 0.3759449153113336 No Hit CCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGC 1061 0.2859337312869713 No Hit CTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGCT 817 0.2201770579278563 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCCGTGTATTCGT 581 0.15657634107231888 No Hit GAATGCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTT 563 0.1517254389392694 No Hit GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCCCGTGTAT 509 0.137172732540121 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATG 498 0.1342082923477019 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTAT 486 0.13097435759233558 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.6949456294719256E-4 0.0 0.0 0.22960936763100803 0.0 2 2.6949456294719256E-4 0.0 0.0 1.8064220554350316 0.0 3 2.6949456294719256E-4 0.0 0.0 2.1758991012356326 0.0 4 2.6949456294719256E-4 0.0 0.0 3.189468152480024 0.0 5 2.6949456294719256E-4 0.0 0.0 7.68032554943204 0.0 6 2.6949456294719256E-4 0.0 0.0 8.547559052996105 0.0 7 2.6949456294719256E-4 0.0 0.0 10.026275719887352 0.0 8 2.6949456294719256E-4 0.0 0.0 11.660221255036179 0.0 9 2.6949456294719256E-4 0.0 0.0 12.072278441782437 0.0 10 2.6949456294719256E-4 0.0 0.0 15.991537870723459 0.0 11 2.6949456294719256E-4 0.0 0.0 17.350868446229097 0.0 12 2.6949456294719256E-4 0.0 0.0 21.9198792664358 0.0 13 2.6949456294719256E-4 0.0 0.0 22.522199614622775 0.0 14 2.6949456294719256E-4 0.0 0.0 22.84909651947772 0.0 15 2.6949456294719256E-4 0.0 0.0 23.78020023446027 0.0 16 2.6949456294719256E-4 0.0 0.0 24.659830487919905 0.0 17 2.6949456294719256E-4 0.0 0.0 25.494185654804415 0.0 18 2.6949456294719256E-4 0.0 0.0 26.342824033525122 0.0 19 2.6949456294719256E-4 0.0 0.0 27.73772789133979 0.0 20 2.6949456294719256E-4 0.0 0.0 28.383436864161265 0.0 21 2.6949456294719256E-4 0.0 0.0 29.019983021842535 0.0 22 2.6949456294719256E-4 0.0 0.0 29.831970140002426 0.0 23 2.6949456294719256E-4 0.0 0.0 30.489806368156522 0.0 24 5.389891258943851E-4 0.0 0.0 31.0150512713406 0.0 25 5.389891258943851E-4 0.0 0.0 31.478042930483877 0.0 26 5.389891258943851E-4 0.0 0.0 31.934566720116422 0.0 27 5.389891258943851E-4 0.0 0.0 32.476789780766175 0.0 28 5.389891258943851E-4 0.0 0.0 32.93385255952461 0.0 29 5.389891258943851E-4 0.0 0.0 33.40977995768935 0.0 30 5.389891258943851E-4 0.0 0.0 33.91912468165955 0.0 31 5.389891258943851E-4 0.0 0.0 34.412838720978804 0.0 32 5.389891258943851E-4 0.0 0.0 34.87124897255198 0.0 33 5.389891258943851E-4 0.0 0.0 35.33585759907294 0.0 34 5.389891258943851E-4 0.0 0.0 35.78321857356528 0.0 35 5.389891258943851E-4 0.0 0.0 36.264805357551914 0.0 36 5.389891258943851E-4 0.0 0.0 36.711896837481305 0.0 37 5.389891258943851E-4 0.0 0.0 37.17434950749869 0.0 38 5.389891258943851E-4 0.0 0.0 37.60985272122135 0.0 39 5.389891258943851E-4 0.0 0.0 38.06287308153558 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTACTC 30 2.1615142E-6 45.000004 9 TCTATGC 30 2.1615142E-6 45.000004 30 CGACGTC 20 7.027106E-4 45.0 45 GCGAACC 25 3.885683E-5 45.0 33 TCGATTA 20 7.027106E-4 45.0 41 TACGGGA 45 3.8380676E-10 45.0 4 CGACAGG 25 3.885683E-5 45.0 2 CCGTATT 25 3.885683E-5 45.0 41 CACTAGA 20 7.027106E-4 45.0 20 CGAATGC 55 1.8189894E-12 45.0 45 ACTCGTT 20 7.027106E-4 45.0 12 CGGTGAT 25 3.885683E-5 45.0 31 TGCTCGG 20 7.027106E-4 45.0 2 CTATTAG 20 7.027106E-4 45.0 1 ATTGCGG 35 1.2089549E-7 45.0 2 TATCGGG 20 7.027106E-4 45.0 3 TACGGCT 1370 0.0 43.029198 7 CCGATGA 700 0.0 42.75 18 CGATGAA 700 0.0 42.75 19 ACGGCTG 1385 0.0 42.72563 8 >>END_MODULE