SRR3550965_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550965_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	457899
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGC	12056	2.632895027069288	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTC	10756	2.3489896243494743	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCG	9849	2.1509110087595738	No Hit
GCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCTGC	3882	0.8477852102756286	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCGTCCTAAT	2410	0.5263169388882701	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCT	2238	0.48875407022072553	No Hit
GAACTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCT	2125	0.464076139061234	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTC	1844	0.4027088943194897	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCGTCCTAATCGTA	1824	0.398341118893031	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1189	0.2596642491029681	No Hit
CCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCTGC	1106	0.24153798108316463	No Hit
CTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCTGCT	858	0.18737756579507708	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	747	0.16313641217823144	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTT	562	0.12273448948348872	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATG	542	0.11836671405703005	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCGTCCTAATCGT	460	0.10045883480854949	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACCCG	20	7.0288347E-4	45.000004	45
GTACATC	20	7.0288347E-4	45.000004	36
TGACGGA	20	7.0288347E-4	45.000004	44
GCGTTCG	20	7.0288347E-4	45.000004	44
CGTTCGG	20	7.0288347E-4	45.000004	45
TCTAGCG	20	7.0288347E-4	45.000004	1
GTAGCGA	20	7.0288347E-4	45.000004	29
AAGCCGT	20	7.0288347E-4	45.000004	25
TTAAGCG	20	7.0288347E-4	45.000004	1
ACGTGCT	20	7.0288347E-4	45.000004	30
CGTACAT	20	7.0288347E-4	45.000004	35
TCGTACA	20	7.0288347E-4	45.000004	34
CGGTCTA	30	2.1626292E-6	45.000004	31
CACACGA	30	2.1626292E-6	45.000004	13
TCGACGT	20	7.0288347E-4	45.000004	26
GGTTACG	20	7.0288347E-4	45.000004	1
TAACTAT	20	7.0288347E-4	45.000004	28
GTGATAG	55	1.8189894E-12	45.0	1
GTAGATG	25	3.8871167E-5	45.0	1
TGTAGCG	35	1.2097917E-7	45.0	1