##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3550965_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 457899 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.29265405689901 31.0 31.0 33.0 28.0 34.0 2 31.210247237928016 31.0 31.0 34.0 28.0 34.0 3 31.154951201029046 31.0 31.0 34.0 28.0 34.0 4 35.07646882827873 35.0 35.0 37.0 32.0 37.0 5 35.27502353139011 35.0 35.0 37.0 33.0 37.0 6 35.16858739591045 36.0 35.0 37.0 33.0 37.0 7 35.5006693615841 37.0 35.0 37.0 33.0 37.0 8 34.98636380511859 37.0 35.0 37.0 32.0 37.0 9 36.82697057648084 39.0 37.0 39.0 32.0 39.0 10 36.41932609592945 37.0 35.0 39.0 32.0 39.0 11 36.62814725518073 38.0 35.0 39.0 32.0 39.0 12 36.73956265464655 39.0 35.0 39.0 33.0 39.0 13 36.64564674742683 39.0 35.0 39.0 32.0 39.0 14 37.6502132566352 39.0 36.0 41.0 33.0 41.0 15 37.686053037897004 40.0 36.0 41.0 32.0 41.0 16 37.86308989536994 39.0 36.0 41.0 33.0 41.0 17 37.63112171024615 39.0 36.0 41.0 32.0 41.0 18 37.61763183584153 39.0 36.0 41.0 33.0 41.0 19 37.532198148499994 39.0 36.0 41.0 32.0 41.0 20 37.42257135307131 39.0 36.0 41.0 32.0 41.0 21 37.524360175497215 39.0 36.0 41.0 32.0 41.0 22 37.675308310347916 39.0 36.0 41.0 33.0 41.0 23 37.72374475593963 39.0 36.0 41.0 33.0 41.0 24 37.56928492964606 39.0 36.0 41.0 33.0 41.0 25 37.39278094077515 39.0 35.0 41.0 32.0 41.0 26 37.377550507863084 39.0 35.0 41.0 32.0 41.0 27 37.41249707905018 39.0 36.0 41.0 33.0 41.0 28 37.235942860761874 39.0 35.0 41.0 32.0 41.0 29 37.29537736487741 39.0 35.0 41.0 32.0 41.0 30 37.06551663139688 39.0 35.0 41.0 31.0 41.0 31 37.04092605574592 39.0 35.0 41.0 31.0 41.0 32 36.93719138936753 39.0 35.0 41.0 31.0 41.0 33 36.89521269974383 39.0 35.0 41.0 31.0 41.0 34 36.87306371055626 39.0 35.0 41.0 31.0 41.0 35 36.84009355774963 39.0 35.0 41.0 31.0 41.0 36 36.73312236978023 39.0 35.0 41.0 31.0 41.0 37 36.75160679538501 39.0 35.0 41.0 31.0 41.0 38 36.5635959021531 39.0 35.0 41.0 30.0 41.0 39 36.591460125486186 39.0 35.0 41.0 31.0 41.0 40 36.46102743181357 39.0 35.0 41.0 30.0 41.0 41 36.203254429470256 39.0 35.0 40.0 30.0 41.0 42 36.29658723867054 39.0 35.0 41.0 30.0 41.0 43 36.33958580385631 39.0 35.0 40.0 30.0 41.0 44 36.33126955944433 39.0 35.0 40.0 30.0 41.0 45 36.27477238430309 39.0 35.0 40.0 30.0 41.0 46 36.16765924363233 39.0 35.0 40.0 30.0 41.0 47 36.01044771882009 38.0 35.0 40.0 30.0 41.0 48 35.97504471510093 38.0 35.0 40.0 30.0 41.0 49 36.00468662303259 38.0 35.0 40.0 30.0 41.0 50 35.891183426912924 38.0 35.0 40.0 29.0 41.0 51 34.712971637850266 37.0 33.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 2.0 9 13.0 10 9.0 11 9.0 12 6.0 13 11.0 14 14.0 15 22.0 16 22.0 17 68.0 18 150.0 19 299.0 20 657.0 21 1227.0 22 1769.0 23 2382.0 24 2844.0 25 3486.0 26 4041.0 27 4565.0 28 5103.0 29 5877.0 30 7709.0 31 10294.0 32 13894.0 33 19397.0 34 32732.0 35 36494.0 36 38133.0 37 56800.0 38 98442.0 39 111409.0 40 18.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 50.0405111170804 17.896959809914414 20.827300343525536 11.235228729479644 2 28.658284905623294 33.08327819016858 21.6344652423351 16.623971661873032 3 28.95136263673867 32.61439749813824 23.80153702017257 14.632702844950524 4 26.711785786821984 22.41935448646972 33.448642604591846 17.420217122116448 5 32.2560215243973 26.40407600802797 21.74846418096567 19.591438286609055 6 24.001362745933054 39.91819156626243 22.74802958731074 13.332416100493777 7 71.16787763240366 5.7416591868512485 18.05485489158089 5.035608289164204 8 68.83897977501589 13.786446356074155 10.80609479383008 6.5684790750798765 9 63.11479168987047 7.4837464156942906 12.021428306242205 17.38003358819303 10 42.408260336886514 22.33418286565378 19.402968776957362 15.854588020502339 11 33.72009984734625 22.624421542741956 24.020799346580795 19.634679263330995 12 28.603687712792556 19.0795350066281 28.292920491200025 24.023856789379316 13 25.922747156032226 22.24049408275624 33.32481617125174 18.511942589959794 14 20.583796863500467 30.016881452023263 26.131745210188274 23.267576474288 15 17.358194711060737 23.219530944596954 38.080231666808615 21.342042677533694 16 18.865514010731623 24.05202894087998 29.621597775928755 27.460859272459647 17 19.410612383953666 25.545152970414875 30.803299417557145 24.240935228074314 18 19.8089535028467 25.216914647116507 29.111659994889706 25.862471855147096 19 21.76025717461711 25.68339306266229 26.723797169244744 25.832552593475853 20 25.247489075101715 25.08238716398158 31.152939840445164 18.517183920471545 21 23.003107672215926 29.855273761244295 26.888462302822237 20.253156263717546 22 19.440094868082262 23.523528114278477 29.364772580852982 27.67160443678628 23 22.440101419745403 28.45802240232016 28.046796345919077 21.05507983201536 24 23.95921371306773 23.949167829586873 26.06164241459361 26.029976042751784 25 19.727712879914566 31.84042769256976 24.687103487887065 23.744755939628607 26 19.83887276451794 24.7997920938897 28.63120469797925 26.73013044361311 27 25.454303241544533 26.636660049486892 25.35580990567789 22.553226803290684 28 18.09765909076019 26.542971266589355 31.053354560721907 24.306015081928546 29 22.54514641875173 22.515445545851815 26.4377078788117 28.501700156584747 30 23.84761705092171 26.193112454930016 27.062518153566618 22.896752340581656 31 22.557157801174498 23.368472086639194 26.592327128908337 27.48204298327797 32 24.551484060895525 27.817706524801324 22.479848176126175 25.15096123817698 33 22.259275517090014 24.634471793998237 23.75676732205137 29.349485366860378 34 22.032587972456806 23.504091513630733 28.384643775155656 26.0786767387568 35 22.647133974959544 25.518946317856123 23.773364868671912 28.060554838512424 36 20.420660451322235 28.2612541193582 25.303178211789064 26.014907217530503 37 22.799132559800306 24.771838331160364 29.277417072323807 23.151612036715523 38 19.877090799499452 25.677714954607893 25.95747097067257 28.487723275220084 39 22.27609145248188 23.075831133066462 27.562191662353484 27.08588575209817 40 20.533130668553547 23.98301808914193 29.17499273857335 26.30885850373117 41 18.20052020205329 28.18263416168194 28.406701041059275 25.21014459520549 42 20.26189181457046 26.630108386347207 29.240072592427584 23.867927206654745 43 22.837132206010498 26.291605790796662 24.699770036623796 26.17149196656905 44 22.649536251444097 22.762880023760697 28.308862871506594 26.278720853288608 45 20.50080913039775 21.24158384272514 27.35319360819744 30.904413418679667 46 25.522877315739933 25.133708525242465 25.317373481925053 24.026040677092546 47 19.053328354069347 23.075831133066462 34.15425672473624 23.71658378812795 48 21.044378782220534 24.285049759881545 27.321090458812968 27.349480999084953 49 19.535749149921706 22.00812843006864 33.243793937090935 25.21232848291872 50 21.013804354235322 22.017300758464202 29.27654351723852 27.692351370061957 51 19.539461759034197 21.677924607828363 26.38900718280669 32.39360645033075 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 167.0 1 337.5 2 508.0 3 1359.0 4 2210.0 5 1564.5 6 919.0 7 907.0 8 895.0 9 892.5 10 890.0 11 888.0 12 886.0 13 901.0 14 916.0 15 854.0 16 792.0 17 816.5 18 841.0 19 853.0 20 865.0 21 1057.5 22 1250.0 23 1369.5 24 1489.0 25 1708.5 26 2298.0 27 2668.0 28 3333.0 29 3998.0 30 5100.0 31 6202.0 32 6667.5 33 7133.0 34 7981.5 35 8830.0 36 9965.5 37 11101.0 38 12035.0 39 12969.0 40 14425.5 41 15882.0 42 18032.0 43 20182.0 44 22900.0 45 25618.0 46 50267.0 47 74916.0 48 60184.5 49 45453.0 50 43851.5 51 42250.0 52 36974.0 53 31698.0 54 28285.0 55 24872.0 56 23384.0 57 21896.0 58 21328.5 59 20761.0 60 19788.0 61 18815.0 62 17652.5 63 16490.0 64 13413.0 65 10336.0 66 8712.0 67 7088.0 68 6016.5 69 4945.0 70 4136.5 71 3328.0 72 2990.0 73 2652.0 74 1992.5 75 1155.5 76 978.0 77 760.0 78 542.0 79 355.0 80 168.0 81 147.5 82 127.0 83 105.5 84 84.0 85 49.0 86 14.0 87 9.5 88 5.0 89 5.5 90 6.0 91 4.0 92 2.0 93 1.0 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 457899.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.12065190731302 #Duplication Level Percentage of deduplicated Percentage of total 1 72.79408254605198 21.92605221281842 2 10.41356970590051 6.273270164479388 3 3.726910844985365 3.3677095275418205 4 1.9152605844140427 2.3075558949972916 5 1.1911389017917768 1.7938940117064612 6 0.8358680177207265 1.5106133761333054 7 0.6748156576050635 1.4228121267028655 8 0.6054582665493721 1.4589438152911023 9 0.520333807749505 1.4105514148946616 >10 7.167783373468489 42.78540505158405 >50 0.10245887051928407 2.0709888572633015 >100 0.041419543401412705 2.2933651708312066 >500 0.0029066346246605407 0.59293054473962 >1k 0.005813269249321081 3.6372535225112608 >5k 7.266586561651352E-4 2.1556932207975334 >10k+ 0.0014533173123302703 4.9929610877077195 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGC 12056 2.632895027069288 No Hit GAATCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTC 10756 2.3489896243494743 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCG 9849 2.1509110087595738 No Hit GCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCTGC 3882 0.8477852102756286 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCGTCCTAAT 2410 0.5263169388882701 No Hit GAATGACTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCT 2238 0.48875407022072553 No Hit GAACTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCT 2125 0.464076139061234 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTC 1844 0.4027088943194897 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCGTCCTAATCGTA 1824 0.398341118893031 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1189 0.2596642491029681 No Hit CCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCTGC 1106 0.24153798108316463 No Hit CTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTTCTGCT 858 0.18737756579507708 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 747 0.16313641217823144 No Hit GAATGCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATGCCGTCTT 562 0.12273448948348872 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCCGTCCTAATCGTATG 542 0.11836671405703005 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCGTCCTAATCGT 460 0.10045883480854949 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.367775426458673E-4 0.0 0.0 0.19698667173328616 0.0 2 4.367775426458673E-4 0.0 0.0 1.5153996842098367 0.0 3 4.367775426458673E-4 0.0 0.0 1.870063048838281 0.0 4 4.367775426458673E-4 0.0 0.0 2.762836346006434 0.0 5 4.367775426458673E-4 0.0 0.0 6.32169976348496 0.0 6 4.367775426458673E-4 0.0 0.0 7.085623685572583 0.0 7 4.367775426458673E-4 0.0 0.0 8.252038113208371 0.0 8 4.367775426458673E-4 0.0 0.0 9.769403296360114 0.0 9 4.367775426458673E-4 0.0 0.0 10.178227076276647 0.0 10 4.367775426458673E-4 0.0 0.0 13.216233274149976 0.0 11 4.367775426458673E-4 0.0 0.0 14.523290070517735 0.0 12 4.367775426458673E-4 0.0 0.0 18.268220721163402 0.0 13 4.367775426458673E-4 0.0 0.0 18.853721017080186 0.0 14 4.367775426458673E-4 0.0 0.0 19.124086315977976 0.0 15 4.367775426458673E-4 0.0 0.0 19.889102181922215 0.0 16 4.367775426458673E-4 0.0 0.0 20.66132487732011 0.0 17 4.367775426458673E-4 0.0 0.0 21.46390361193189 0.0 18 4.367775426458673E-4 0.0 0.0 22.26036746094663 0.0 19 4.367775426458673E-4 0.0 0.0 23.384196078174444 0.0 20 4.367775426458673E-4 0.0 0.0 23.95550110395524 0.0 21 4.367775426458673E-4 0.0 0.0 24.593414704989527 0.0 22 4.367775426458673E-4 0.0 0.0 25.34248819062719 0.0 23 4.367775426458673E-4 0.0 0.0 26.021895658212838 0.0 24 4.367775426458673E-4 0.0 0.0 26.52768405259675 0.0 25 4.367775426458673E-4 0.0 0.0 27.00530029548001 0.0 26 6.551663139688009E-4 0.0 0.0 27.45605471949054 0.0 27 6.551663139688009E-4 0.0 0.0 27.99350948571628 0.0 28 6.551663139688009E-4 0.0 0.0 28.428976695734214 0.0 29 6.551663139688009E-4 0.0 0.0 28.866627793465373 0.0 30 6.551663139688009E-4 0.0 0.0 29.374600075562515 0.0 31 6.551663139688009E-4 0.0 0.0 29.859859925442073 0.0 32 6.551663139688009E-4 0.0 0.0 30.361498933170854 0.0 33 6.551663139688009E-4 0.0 0.0 30.827540571173994 0.0 34 6.551663139688009E-4 0.0 0.0 31.263881336277215 0.0 35 6.551663139688009E-4 0.0 0.0 31.726210365167866 0.0 36 6.551663139688009E-4 0.0 0.0 32.20426338559377 0.0 37 6.551663139688009E-4 0.0 0.0 32.69935073018286 0.0 38 6.551663139688009E-4 0.0 0.0 33.14289832473973 0.0 39 8.735550852917346E-4 0.0 0.0 33.60107796697525 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTACCCG 20 7.0288347E-4 45.000004 45 GTACATC 20 7.0288347E-4 45.000004 36 TGACGGA 20 7.0288347E-4 45.000004 44 GCGTTCG 20 7.0288347E-4 45.000004 44 CGTTCGG 20 7.0288347E-4 45.000004 45 TCTAGCG 20 7.0288347E-4 45.000004 1 GTAGCGA 20 7.0288347E-4 45.000004 29 AAGCCGT 20 7.0288347E-4 45.000004 25 TTAAGCG 20 7.0288347E-4 45.000004 1 ACGTGCT 20 7.0288347E-4 45.000004 30 CGTACAT 20 7.0288347E-4 45.000004 35 TCGTACA 20 7.0288347E-4 45.000004 34 CGGTCTA 30 2.1626292E-6 45.000004 31 CACACGA 30 2.1626292E-6 45.000004 13 TCGACGT 20 7.0288347E-4 45.000004 26 GGTTACG 20 7.0288347E-4 45.000004 1 TAACTAT 20 7.0288347E-4 45.000004 28 GTGATAG 55 1.8189894E-12 45.0 1 GTAGATG 25 3.8871167E-5 45.0 1 TGTAGCG 35 1.2097917E-7 45.0 1 >>END_MODULE