SRR3550958_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550958_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	375053
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGC	4092	1.0910457988604276	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCGTCTTC	3830	1.0211890052872528	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCG	3550	0.9465328900182108	No Hit
GCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCGTCTTCTGC	1795	0.4785990246711798	TruSeq Adapter, Index 16 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCGTCTTCTGC	833	0.2221019429253999	TruSeq Adapter, Index 16 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGCGTCTAT	814	0.21703599224642917	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCGTCT	764	0.2037045430912431	No Hit
GAACTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCGTCTTCT	704	0.1877068041050198	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	699	0.18637365918950122	No Hit
CTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCGTCTTCTGCT	647	0.1725089520681077	TruSeq Adapter, Index 13 (95% over 22bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGCGTCTATCGTA	602	0.16051064782844027	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCGTC	565	0.15064537545360254	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAGTACG	20	7.0272037E-4	45.0	1
CGTTCTG	20	7.0272037E-4	45.0	1
ACGGGTG	35	1.2090095E-7	45.0	5
TCTACGG	20	7.0272037E-4	45.0	2
CATAGCG	20	7.0272037E-4	45.0	1
GGGCGTA	20	7.0272037E-4	45.0	7
GTATACG	20	7.0272037E-4	45.0	1
TATAGCG	40	6.7939254E-9	45.0	1
TAGGACG	20	7.0272037E-4	45.0	1
CGGTAGT	25	3.8857637E-5	45.0	12
CGCCGGT	20	7.0272037E-4	45.0	28
TCGAACG	25	3.8857637E-5	45.0	1
TGCGTAG	20	7.0272037E-4	45.0	1
CGATGAA	145	0.0	43.448273	19
GTGCGAG	55	6.002665E-11	40.909092	1
TACGGCT	475	0.0	40.73684	7
CTCGTAA	100	0.0	40.5	33
CTACGGG	100	0.0	40.5	3
CGTAACC	100	0.0	40.5	35
ATAGCGG	80	0.0	39.375	2