SRR3550955_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550955_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	128873
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1578	1.2244612913488473	No Hit
CCTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGTCTTCTGC	597	0.46324676231638895	No Hit
GCTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGTCTTCTGC	547	0.4244488760252341	No Hit
CTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGTCTTCTGCT	415	0.3220224562165853	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCC	410	0.31814266758746984	No Hit
TCTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGTCTTCTGC	245	0.19010964282665882	No Hit
ACTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGTCTTCTGC	184	0.14277622155144987	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGC	167	0.12958494021245723	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGC	148	0.11484174342181838	No Hit
GAATCTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGTCTTC	142	0.11018599706687979	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCCACGTACTTCGTATGCCGTC	131	0.10165046208282572	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGTATT	20	7.0099643E-4	45.000004	41
GAGCTAG	20	7.0099643E-4	45.000004	1
CCAGCGG	20	7.0099643E-4	45.000004	2
GTGATAG	20	7.0099643E-4	45.000004	1
CGTCTCT	20	7.0099643E-4	45.000004	35
AAGGTAT	20	7.0099643E-4	45.000004	40
TTCAACA	20	7.0099643E-4	45.000004	24
CGGGGTC	20	7.0099643E-4	45.000004	6
CTACGAA	20	7.0099643E-4	45.000004	11
TACGAAT	20	7.0099643E-4	45.000004	12
CGGGCTC	20	7.0099643E-4	45.000004	6
GGAACGT	20	7.0099643E-4	45.000004	8
TAGGGCG	40	6.7338988E-9	45.000004	5
TCCAATC	20	7.0099643E-4	45.000004	12
GCTACGA	20	7.0099643E-4	45.000004	10
GGATTAC	20	7.0099643E-4	45.000004	8
TAAGCGG	20	7.0099643E-4	45.000004	2
AGGGAGC	40	6.7338988E-9	45.000004	6
GTAACGG	20	7.0099643E-4	45.000004	2
TCAACAA	20	7.0099643E-4	45.000004	25