SRR3550948_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550948_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	583527
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7359	1.2611241639204356	No Hit
GAATCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTC	2836	0.48601007322711715	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGC	2612	0.44762281779592034	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCG	2277	0.39021330632515716	No Hit
CGCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCTG	1506	0.2580857441043859	No Hit
GCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCTGC	1274	0.21832751526493205	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTT	1035	0.17736968469325326	No Hit
CCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCTGC	966	0.16554503904703638	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCT	954	0.16348857893465082	No Hit
CTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCTGCT	917	0.15714782692146206	Illumina Single End Adapter 2 (95% over 22bp)
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	789	0.13521225238934959	No Hit
GAACTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCT	698	0.11961742987042587	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCC	676	0.11584725299771904	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	596	0.10213751891514873	No Hit
CGTCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCT	589	0.10093791718292384	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATAGCG	45	3.8380676E-10	45.000004	1
GCTACGA	50	2.1827873E-11	45.000004	10
GACCGAA	20	7.030428E-4	45.0	11
GACCCGT	20	7.030428E-4	45.0	12
ACGATAG	20	7.030428E-4	45.0	1
CGTTTTT	4765	0.0	43.394543	1
ATAGCGG	80	0.0	42.1875	2
CTACGAA	55	6.002665E-11	40.909092	11
CGTAAGG	50	1.0804797E-9	40.500004	2
ACGGGAC	155	0.0	39.193546	5
TCGTGTA	180	0.0	38.750004	17
GTTTTTT	5470	0.0	38.007317	2
CCTCGTG	185	0.0	37.7027	15
GTAGGGA	335	0.0	37.611942	4
TCTACGG	30	1.1392332E-4	37.499996	2
CGAATAT	60	1.546141E-10	37.499996	14
GCGATTC	30	1.1392332E-4	37.499996	9
GCTAACG	30	1.1392332E-4	37.499996	1
CGATCCC	30	1.1392332E-4	37.499996	43
TGCGTTG	30	1.1392332E-4	37.499996	1