SRR3550942_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550942_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	621189
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGC	10236	1.6478076720611603	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTC	9091	1.4634837384435333	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCG	8857	1.425814043712944	No Hit
GCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC	3729	0.6003003916682362	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2230	0.3589889711504872	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCT	1878	0.30232344745319056	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCTTAACAT	1686	0.27141497998193787	No Hit
GAACTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCT	1677	0.2699661455692229	No Hit
CCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC	1451	0.23358430364993585	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTC	1387	0.22328148115951826	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCTTAACATCGTA	1293	0.20814921062671746	No Hit
CTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGCT	1110	0.17868957756817974	No Hit
CGCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTG	902	0.14520540447432262	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	872	0.1403759564319394	No Hit
TCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC	652	0.10496000412112899	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCGATT	30	2.1638843E-6	45.000004	9
ACGGCTA	30	2.1638843E-6	45.000004	30
CGGTCTA	30	2.1638843E-6	45.000004	31
ACGTTAT	20	7.0307805E-4	45.0	19
CCTGTCG	20	7.0307805E-4	45.0	10
TAACGAG	35	1.2107193E-7	45.0	1
TGTTGCG	25	3.888728E-5	45.0	1
TGCGCTA	25	3.888728E-5	45.0	37
TGCGCAC	20	7.0307805E-4	45.0	12
CGAGATA	20	7.0307805E-4	45.0	19
ACGTATG	25	3.888728E-5	45.0	1
CACGTTA	20	7.0307805E-4	45.0	18
CGAATAT	190	0.0	43.815784	14
GCTACGA	205	0.0	42.804874	10
ACGGCTG	1040	0.0	42.187504	8
TACGAAT	210	0.0	41.785713	12
TACGGCT	1040	0.0	41.75481	7
CTACGAA	215	0.0	40.813953	11
CGTTTTT	1345	0.0	40.483273	1
CCCTCGT	95	0.0	40.263153	14