SRR3550940_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550940_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	716609
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTC	15123	2.1103558565410148	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGC	11977	1.6713437871977606	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCG	10678	1.4900733873004663	No Hit
GCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGC	4025	0.561673102068213	No Hit
GAACTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCT	3626	0.5059942032544945	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCT	2366	0.3301661017374886	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2349	0.3277938178281322	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTC	2081	0.2903954597276897	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTCCAGGTT	1903	0.26555625173560476	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTT	1818	0.25369483218882266	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTA	1558	0.2174128429869008	No Hit
CCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGC	1348	0.18810815940073317	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	882	0.12307967106190405	No Hit
CTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGCT	876	0.12224239438801356	Illumina Single End Adapter 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAACGTT	20	7.031506E-4	45.0	30
CGACGGT	45	3.8380676E-10	45.0	28
ACCGCGA	40	6.8084773E-9	45.0	30
CGCGATC	25	3.8893304E-5	45.0	32
CGCGACA	20	7.031506E-4	45.0	21
ACATGCG	20	7.031506E-4	45.0	1
CGGTCTA	40	6.8084773E-9	45.0	31
TAGGCCG	20	7.031506E-4	45.0	1
CCGCGAT	25	3.8893304E-5	45.0	31
GCTCGAA	40	6.8084773E-9	45.0	42
ACGGTCT	45	3.8380676E-10	45.0	30
CGAACCC	60	0.0	44.999996	34
AAGCACG	30	2.1643536E-6	44.999996	1
TGAACGG	85	0.0	42.35294	2
ACATACG	85	0.0	42.35294	17
CGATGAA	1115	0.0	42.174885	19
TAATACG	175	0.0	41.142857	4
CCGATGA	1095	0.0	41.09589	18
TACGGCT	1600	0.0	40.921875	7
CGAATAT	110	0.0	40.909092	14