SRR3550938_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550938_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	568536
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGC	9774	1.7191523491916079	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTC	8600	1.5126570700887896	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCG	8379	1.4737853011946473	No Hit
GCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTGC	3547	0.6238830962331321	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTGC	1903	0.3347193493463914	Illumina Single End Adapter 2 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCT	1817	0.31959277864550356	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGCCCAGAT	1661	0.29215388295552086	No Hit
GAACTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCT	1596	0.2807210097513614	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTC	1387	0.24395992514106407	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1374	0.24167335050023214	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGCCCAGATCGTA	1307	0.22988869658209857	No Hit
CTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTGCT	1221	0.21476212588121069	Illumina Single End Adapter 2 (95% over 22bp)
GAATGCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTT	572	0.10060928419660321	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTGCACG	25	3.888309E-5	45.000004	1
GCGAACC	25	3.888309E-5	45.000004	33
AGTTACG	25	3.888309E-5	45.000004	1
CACCCGT	25	3.888309E-5	45.000004	16
AGCGTTG	35	1.2104829E-7	45.0	1
CCGGCAC	20	7.0302765E-4	45.0	36
ATCGTTC	20	7.0302765E-4	45.0	23
TATAGCG	20	7.0302765E-4	45.0	1
TTACGCC	20	7.0302765E-4	45.0	44
ACCGTAG	20	7.0302765E-4	45.0	1
CGCAAAT	20	7.0302765E-4	45.0	2
TGGTCGA	20	7.0302765E-4	45.0	1
AGTCGAG	20	7.0302765E-4	45.0	1
TAACCGG	30	2.1635587E-6	44.999996	2
AATAGCG	30	2.1635587E-6	44.999996	1
TACGGCT	1145	0.0	41.462883	7
TTGCGAG	55	6.002665E-11	40.90909	1
ACGGCTG	1180	0.0	40.42373	8
GCGATTA	85	0.0	39.705883	9
TACCAGG	40	3.4541154E-7	39.375	2