SRR3550930_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550930_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	445419
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGC	7774	1.7453229431164812	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCG	6764	1.5185701552919835	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTC	6061	1.3607412346577041	No Hit
GCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC	2479	0.5565546148682476	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCT	1410	0.31655587211142766	No Hit
CCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC	1230	0.27614448418230925	No Hit
GAACTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCT	1226	0.2752464533394399	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTAGCGGTT	1172	0.26312303696070444	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTA	971	0.21799698710652216	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTC	952	0.213731340602893	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	841	0.18881098471326996	No Hit
CTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGCT	732	0.1643396442450816	Illumina Single End Adapter 1 (95% over 21bp)
GAATGCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTT	707	0.1587269514771485	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCCTCGA	20	7.028627E-4	45.000004	41
GGTCGAC	20	7.028627E-4	45.000004	12
GTTAGCG	30	2.1624965E-6	45.000004	1
GTCTACG	20	7.028627E-4	45.000004	1
CGATTGA	45	3.8380676E-10	45.000004	10
GTTAACG	40	6.7993824E-9	45.000004	1
GTCACCG	20	7.028627E-4	45.000004	18
CATCGAA	20	7.028627E-4	45.000004	30
TATACGG	20	7.028627E-4	45.000004	2
TCGACGC	20	7.028627E-4	45.000004	14
CCGTTTG	20	7.028627E-4	45.000004	5
CGGGTCA	35	1.2096825E-7	45.0	6
TACGGCT	855	0.0	43.157894	7
ACGGCTG	890	0.0	41.713486	8
TTAACGG	60	3.6379788E-12	41.250004	2
TAATACG	110	0.0	40.909092	4
ACGGGGT	105	0.0	40.714287	5
CGCATGG	50	1.0786607E-9	40.500004	2
GCATAAG	40	3.4518598E-7	39.375004	1
ACAACGA	80	0.0	39.375004	13