SRR3550929_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550929_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	507140
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGC	13476	2.657254407067082	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCG	12143	2.394407855818906	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTC	11407	2.249280277635367	No Hit
GCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC	3635	0.7167646014907126	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCT	2406	0.474425208029341	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGAGTTACT	2210	0.43577710296959415	No Hit
GAACTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCT	1766	0.34822731395669837	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTC	1659	0.32712860354142836	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGAGTTACTCGTA	1656	0.32653705091296287	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1271	0.25062113025988875	No Hit
CCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC	964	0.190085577946918	No Hit
CTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGCT	666	0.1313246835193438	TruSeq Adapter, Index 27 (95% over 23bp)
GAATGCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTT	664	0.13093031510036676	No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCG	632	0.12462042039673464	No Hit
GAATAATACGGCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGC	611	0.12047955199747604	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATG	512	0.10095831525811413	No Hit
GAATATGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTC	511	0.10076113104862564	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGACACG	65	0.0	45.000004	24
CTCGAAT	85	0.0	45.000004	43
CGGCTAT	35	1.2101373E-7	45.000004	31
CGAACGG	20	7.0295535E-4	45.0	2
CGAACCC	25	3.8877115E-5	45.0	34
TCGGGCA	20	7.0295535E-4	45.0	5
ACGGGTA	55	1.8189894E-12	45.0	5
TATTGCG	20	7.0295535E-4	45.0	1
CTAACGG	25	3.8877115E-5	45.0	2
CGAATAT	55	1.8189894E-12	45.0	14
ACGTCCG	20	7.0295535E-4	45.0	23
ATACGGT	45	3.8380676E-10	45.0	28
CGATCCA	20	7.0295535E-4	45.0	34
TCGGTCA	20	7.0295535E-4	45.0	19
AATCGCG	20	7.0295535E-4	45.0	18
TAATCCG	20	7.0295535E-4	45.0	4
CCGATGA	885	0.0	42.966103	18
TAATACG	200	0.0	42.75	4
CGATGAA	900	0.0	42.75	19
CGAATGC	90	0.0	42.5	45