##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3550929_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 507140 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.828406357218913 33.0 31.0 34.0 30.0 34.0 2 31.87664944591237 33.0 31.0 34.0 30.0 34.0 3 31.933048073510275 33.0 31.0 34.0 30.0 34.0 4 35.65334030050874 37.0 35.0 37.0 33.0 37.0 5 33.6431774263517 37.0 35.0 37.0 32.0 37.0 6 34.53097961115274 37.0 35.0 37.0 30.0 37.0 7 35.53549512955003 37.0 35.0 37.0 32.0 37.0 8 35.42715029380447 37.0 35.0 37.0 33.0 37.0 9 37.259878928895375 39.0 37.0 39.0 34.0 39.0 10 37.02545845328706 39.0 37.0 39.0 33.0 39.0 11 36.987892889537406 39.0 37.0 39.0 33.0 39.0 12 36.90229719604054 39.0 35.0 39.0 33.0 39.0 13 36.75962653310723 39.0 35.0 39.0 32.0 39.0 14 37.878873683795405 40.0 37.0 41.0 33.0 41.0 15 37.83001143668415 40.0 36.0 41.0 33.0 41.0 16 38.01707418069961 40.0 37.0 41.0 33.0 41.0 17 37.78684781322712 40.0 36.0 41.0 33.0 41.0 18 37.81542769255038 40.0 36.0 41.0 33.0 41.0 19 37.74936309500335 40.0 36.0 41.0 33.0 41.0 20 37.52259533856529 40.0 36.0 41.0 32.0 41.0 21 37.68724218164609 40.0 36.0 41.0 33.0 41.0 22 37.705880033126945 40.0 36.0 41.0 33.0 41.0 23 37.63159285404425 40.0 36.0 41.0 33.0 41.0 24 37.617468549118584 40.0 36.0 41.0 33.0 41.0 25 37.587748945064476 39.0 36.0 41.0 33.0 41.0 26 37.4883957092716 39.0 36.0 41.0 33.0 41.0 27 37.41124935915132 40.0 36.0 41.0 33.0 41.0 28 37.27354182277083 39.0 35.0 41.0 32.0 41.0 29 37.2299562251055 39.0 35.0 41.0 32.0 41.0 30 37.08059510194423 39.0 35.0 41.0 31.0 41.0 31 37.07166068541231 39.0 35.0 41.0 31.0 41.0 32 36.926197894072644 39.0 35.0 41.0 31.0 41.0 33 36.65613440075719 39.0 35.0 41.0 30.0 41.0 34 36.55851047048152 39.0 35.0 41.0 30.0 41.0 35 36.52055448199708 39.0 35.0 41.0 30.0 41.0 36 36.43397483929487 39.0 35.0 41.0 30.0 41.0 37 36.39764167685452 39.0 35.0 41.0 30.0 41.0 38 36.01625586623023 39.0 35.0 41.0 29.0 41.0 39 36.09583349765351 39.0 35.0 41.0 30.0 41.0 40 35.830340734314 39.0 35.0 41.0 28.0 41.0 41 35.870079268052216 39.0 35.0 40.0 28.0 41.0 42 35.959626533107226 39.0 35.0 41.0 28.0 41.0 43 35.954235516819814 39.0 35.0 41.0 29.0 41.0 44 35.93655992428126 39.0 35.0 40.0 29.0 41.0 45 35.87037307252435 38.0 35.0 40.0 28.0 41.0 46 35.70563158102299 38.0 35.0 40.0 28.0 41.0 47 35.47213787119927 38.0 35.0 40.0 28.0 41.0 48 35.49137121899278 38.0 35.0 40.0 28.0 41.0 49 35.45247071814489 38.0 35.0 40.0 28.0 41.0 50 35.25739835154001 38.0 34.0 40.0 27.0 41.0 51 34.02586465275861 36.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 7.0 9 6.0 10 9.0 11 6.0 12 6.0 13 7.0 14 9.0 15 21.0 16 35.0 17 60.0 18 233.0 19 488.0 20 1188.0 21 2142.0 22 2989.0 23 3364.0 24 3758.0 25 4265.0 26 4808.0 27 5357.0 28 5859.0 29 6847.0 30 8487.0 31 11521.0 32 15225.0 33 20733.0 34 33342.0 35 41338.0 36 40825.0 37 59854.0 38 97021.0 39 137247.0 40 83.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 50.87470915329101 18.446385613440075 20.782426943250385 9.896478290018536 2 28.228497061955277 34.72098434357377 21.1286824151122 15.921836179358756 3 28.141144457151874 34.17399534645266 23.039200220846315 14.645659975549158 4 25.695468706865952 21.870292226998462 35.48842528690302 16.94581377923256 5 31.93358835824427 29.770280395945893 20.08616949954648 18.20996174626336 6 23.36139921915053 40.95180817920101 22.302520014197263 13.384272587451196 7 71.06578065228535 5.642426154513547 18.91390937413732 4.377883819063769 8 69.60444847576606 14.874393658555823 10.053239736561896 5.467918129116221 9 63.62464013881768 7.392238829514533 10.573806049611548 18.409314982056237 10 43.449540560791895 21.887841621642938 18.566076428599597 16.096541388965573 11 35.38510076113105 22.272153645936033 23.052214378672556 19.290531214260362 12 27.939030642426154 19.61509642307844 27.00477185786962 25.441101076625785 13 26.311274993098554 21.628938754584535 33.22139843041369 18.838387821903222 14 21.51161414993887 30.6877785226959 25.330283550893245 22.47032377647198 15 17.92779114248531 23.409314982056237 36.90598256891588 21.756911306542573 16 20.30602989312616 24.316559529912844 27.422605197775763 27.95480537918523 17 20.601214654730448 25.88575146902236 30.19422644634618 23.318807429901014 18 20.91335725835075 24.80498481681587 28.479512560634145 25.802145364199237 19 21.806404543124184 26.11882320463777 25.860314705998345 26.214457546239693 20 27.3173088299089 24.73636471191387 30.03154947351816 17.91477698465907 21 23.432385534566393 30.761525417044606 26.539811491895733 19.266277556493275 22 20.990653468470242 23.047087589225853 29.897464211065977 26.06479473123792 23 24.069487715423747 28.42903340300509 27.314153882557086 20.187324999014077 24 24.502504239460503 24.19174192530662 25.330480735102732 25.975273100130142 25 20.224987183026382 33.659936112316124 23.857909058642583 22.257167646014906 26 21.427810860906256 24.217178688330637 29.199826477895652 25.15518397286745 27 26.66482628071144 26.2538943881374 24.206333556808772 22.87494577434239 28 19.490476002681707 28.5591749812675 29.626730291438264 22.323618724612533 29 28.06976377331703 22.476042118547145 26.83499625350002 22.6191978546358 30 24.142248688725008 27.96900264226841 27.99227037898805 19.896478290018536 31 25.451749023938163 26.394486729502702 22.875142958551876 25.27862128800726 32 31.17087983594274 27.752691564459518 22.8301849587885 18.246243640809244 33 24.209685688370076 23.99929013684584 25.71853925937611 26.072484915407973 34 26.89415151634657 24.592223054777772 27.71798714358954 20.795638285286113 35 25.75501833813148 25.13408526245218 24.686082738494303 24.424813660922034 36 24.847773790274875 29.163938951768742 23.554639744449265 22.43364751350712 37 27.439365855582288 25.527664944591237 27.385731750601412 19.647237449225067 38 21.36747249280278 29.054304531293134 25.078084946957446 24.50013802894664 39 27.66021217020941 23.28666640375439 27.565563749654924 21.487557676381275 40 22.12387112040068 25.20349410419214 31.232006940884173 21.44062783452301 41 20.321213077256772 25.848089285010055 27.11026540994597 26.7204322277872 42 22.107307646803644 27.082265252198606 28.255314114445717 22.555112986552036 43 24.956816658122015 23.212130772567733 24.406475529439604 27.424577039870645 44 24.199234925267184 22.50838032890326 28.853571006033835 24.438813739795716 45 21.582600465354734 22.433055960878654 27.610521749418304 28.373821824348305 46 28.025988878810587 26.192767283195963 24.658082580746935 21.12316125724652 47 20.307015814173603 23.808218637851482 34.542138265567694 21.342627282407225 48 23.070158141736012 25.14118389399377 26.399219150530424 25.389438813739794 49 21.637417675592538 22.601845644200814 32.4819576448318 23.278779035374846 50 22.563000354931578 22.732381590882202 28.795204480025237 25.909413574160983 51 22.417084039910083 22.036124147178292 26.190795441101077 29.355996371810544 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 110.0 1 422.5 2 735.0 3 1679.0 4 2623.0 5 1858.0 6 1093.0 7 1039.0 8 985.0 9 976.5 10 968.0 11 949.0 12 930.0 13 949.5 14 969.0 15 969.5 16 970.0 17 973.0 18 976.0 19 1068.0 20 1160.0 21 1134.0 22 1108.0 23 1327.0 24 1546.0 25 1869.0 26 2701.0 27 3210.0 28 3708.5 29 4207.0 30 5342.5 31 6478.0 32 7650.0 33 8822.0 34 9247.0 35 9672.0 36 10746.0 37 11820.0 38 13459.5 39 15099.0 40 16934.0 41 18769.0 42 20700.0 43 22631.0 44 26300.5 45 29970.0 46 55962.5 47 81955.0 48 64186.0 49 46417.0 50 45769.5 51 45122.0 52 39115.5 53 33109.0 54 30688.0 55 28267.0 56 26930.5 57 25594.0 58 24418.0 59 23242.0 60 23041.5 61 22841.0 62 19967.5 63 17094.0 64 14408.0 65 11722.0 66 10054.5 67 8387.0 68 7107.0 69 5827.0 70 5054.0 71 4281.0 72 3344.5 73 2408.0 74 2032.5 75 1424.0 76 1191.0 77 866.0 78 541.0 79 396.0 80 251.0 81 178.0 82 105.0 83 68.5 84 32.0 85 32.0 86 32.0 87 20.5 88 9.0 89 6.0 90 3.0 91 4.5 92 6.0 93 4.5 94 3.0 95 2.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 507140.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.19581511388843 #Duplication Level Percentage of deduplicated Percentage of total 1 73.6842098175168 21.512705666451833 2 9.634535082103453 5.625762099307286 3 3.4358549783278174 3.009377601161763 4 1.7682752086189852 2.0650494424524957 5 1.0881386568726903 1.5884547522164973 6 0.8368088234360643 1.4658789416825904 7 0.7074584202717398 1.4458377667312106 8 0.6008381863887094 1.403356848253504 9 0.5354779387931569 1.4070343408713963 >10 7.55120151525763 45.386774743387775 >50 0.11044751596253792 2.0368426818423813 >100 0.035234790368417014 1.9371370960179288 >500 0.004743144857286905 0.9020981574593298 >1k 0.004743144857286905 2.8888902178461824 >5k 0.0 0.0 >10k+ 0.002032776367408674 7.324799644317793 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGC 13476 2.657254407067082 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCG 12143 2.394407855818906 No Hit GAATCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTC 11407 2.249280277635367 No Hit GCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC 3635 0.7167646014907126 No Hit GAATGACTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCT 2406 0.474425208029341 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGAGTTACT 2210 0.43577710296959415 No Hit GAACTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCT 1766 0.34822731395669837 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTC 1659 0.32712860354142836 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGAGTTACTCGTA 1656 0.32653705091296287 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1271 0.25062113025988875 No Hit CCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC 964 0.190085577946918 No Hit CTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGCT 666 0.1313246835193438 TruSeq Adapter, Index 27 (95% over 23bp) GAATGCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTT 664 0.13093031510036676 No Hit GAATAATACCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCG 632 0.12462042039673464 No Hit GAATAATACGGCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGC 611 0.12047955199747604 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATG 512 0.10095831525811413 No Hit GAATATGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTC 511 0.10076113104862564 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.14098670978428046 0.0 2 0.0 0.0 0.0 1.2467957565958119 0.0 3 0.0 0.0 0.0 1.519107149899436 0.0 4 0.0 0.0 0.0 2.188350356903419 0.0 5 1.9718420948850417E-4 0.0 0.0 5.38095989273179 0.0 6 1.9718420948850417E-4 0.0 0.0 6.044287573451118 0.0 7 1.9718420948850417E-4 0.0 0.0 7.099420278424104 0.0 8 1.9718420948850417E-4 0.0 0.0 8.231454825097606 0.0 9 1.9718420948850417E-4 0.0 0.0 8.545372086603304 0.0 10 1.9718420948850417E-4 0.0 0.0 11.82040462199787 0.0 11 1.9718420948850417E-4 0.0 0.0 12.806917222068856 0.0 12 1.9718420948850417E-4 0.0 0.0 16.494064755294396 0.0 13 1.9718420948850417E-4 0.0 0.0 16.947588437117954 0.0 14 1.9718420948850417E-4 0.0 0.0 17.178688330638483 0.0 15 1.9718420948850417E-4 0.0 0.0 17.805536932602436 0.0 16 3.9436841897700834E-4 0.0 0.0 18.418582639902198 0.0 17 3.9436841897700834E-4 0.0 0.0 19.075008873289427 0.0 18 3.9436841897700834E-4 0.0 0.0 19.65966005442284 0.0 19 3.9436841897700834E-4 0.0 0.0 20.5523129707773 0.0 20 3.9436841897700834E-4 0.0 0.0 21.040935441889815 0.0 21 3.9436841897700834E-4 0.0 0.0 21.519304334108924 0.0 22 3.9436841897700834E-4 0.0 0.0 22.132350041408685 0.0 23 3.9436841897700834E-4 0.0 0.0 22.621366880940176 0.0 24 3.9436841897700834E-4 0.0 0.0 23.031115668257286 0.0 25 3.9436841897700834E-4 0.0 0.0 23.386441613755572 0.0 26 3.9436841897700834E-4 0.0 0.0 23.72954213826557 0.0 27 3.9436841897700834E-4 0.0 0.0 24.173009425405212 0.0 28 3.9436841897700834E-4 0.0 0.0 24.496983081594827 0.0 29 3.9436841897700834E-4 0.0 0.0 24.852111842883623 0.0 30 3.9436841897700834E-4 0.0 0.0 25.249043656583982 0.0 31 3.9436841897700834E-4 0.0 0.0 25.624088023031117 0.0 32 3.9436841897700834E-4 0.0 0.0 25.987301336908942 0.0 33 3.9436841897700834E-4 0.0 0.0 26.32231730882991 0.0 34 3.9436841897700834E-4 0.0 0.0 26.63426272824072 0.0 35 3.9436841897700834E-4 0.0 0.0 26.992743621090824 0.0 36 5.915526284655125E-4 0.0 0.0 27.35299917182632 0.0 37 5.915526284655125E-4 0.0 0.0 27.72745198564499 0.0 38 5.915526284655125E-4 0.0 0.0 28.09401743108412 0.0 39 7.887368379540167E-4 0.0 0.0 28.428244666167135 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGACACG 65 0.0 45.000004 24 CTCGAAT 85 0.0 45.000004 43 CGGCTAT 35 1.2101373E-7 45.000004 31 CGAACGG 20 7.0295535E-4 45.0 2 CGAACCC 25 3.8877115E-5 45.0 34 TCGGGCA 20 7.0295535E-4 45.0 5 ACGGGTA 55 1.8189894E-12 45.0 5 TATTGCG 20 7.0295535E-4 45.0 1 CTAACGG 25 3.8877115E-5 45.0 2 CGAATAT 55 1.8189894E-12 45.0 14 ACGTCCG 20 7.0295535E-4 45.0 23 ATACGGT 45 3.8380676E-10 45.0 28 CGATCCA 20 7.0295535E-4 45.0 34 TCGGTCA 20 7.0295535E-4 45.0 19 AATCGCG 20 7.0295535E-4 45.0 18 TAATCCG 20 7.0295535E-4 45.0 4 CCGATGA 885 0.0 42.966103 18 TAATACG 200 0.0 42.75 4 CGATGAA 900 0.0 42.75 19 CGAATGC 90 0.0 42.5 45 >>END_MODULE