SRR3550925_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550925_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1167631
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13960	1.1955831936630665	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTC	9629	0.8246612157436723	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGC	5067	0.43395559042197407	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCG	4834	0.4140006560291736	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTT	3128	0.26789285313596506	No Hit
GAACTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCT	2751	0.2356052554274424	No Hit
CGCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTG	2469	0.21145378976748647	No Hit
GCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC	2332	0.19972063091850079	TruSeq Adapter, Index 23 (95% over 23bp)
CGTTCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTC	2281	0.1953528126608492	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCT	1874	0.16049591009488443	No Hit
CGTCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCT	1438	0.1231553461667256	No Hit
CCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC	1295	0.11090832634625152	TruSeq Adapter, Index 23 (95% over 23bp)
GAATGCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTT	1177	0.10080239390697918	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGTCG	20	7.0333324E-4	45.0	1
CGTTTTT	7480	0.0	43.014706	1
CGTTATT	570	0.0	41.05263	1
TACGGCT	655	0.0	40.534355	7
TCGTTAG	35	6.248374E-6	38.57143	1
GCGAACC	35	6.248374E-6	38.57143	33
CATACGA	100	0.0	38.25	18
ACGGGTA	90	0.0	37.5	5
GTACGAG	30	1.1399332E-4	37.499996	1
TAATACG	85	0.0	37.058826	4
TCGTCCC	85	0.0	37.058826	38
ACTTCGT	25	0.0021071224	36.0	37
CGTTAGG	150	0.0	36.0	2
CCCGTAA	25	0.0021071224	36.0	23
GTTTTTT	9155	0.0	35.783726	2
ACAACGA	380	0.0	35.526318	13
ATAGGGC	370	0.0	35.27027	4
CGTTTCT	390	0.0	34.615383	1
CGTATGG	105	0.0	34.285713	2
GGGCGAT	2195	0.0	34.2369	7