SRR3550918_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550918_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	567934
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGC	4279	0.7534326171703051	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCG	3821	0.6727894438438269	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTC	3400	0.5986611120306233	No Hit
GCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGC	2878	0.506749023654157	No Hit
CCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGC	2544	0.4479393732370311	No Hit
CTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGCT	1250	0.22009599707008207	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1018	0.17924618001387485	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	888	0.1563561963185863	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGTAGGGTT	883	0.155475812330306	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCT	785	0.13822028616001156	No Hit
TCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGC	737	0.1297685998725204	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	685	0.12061260639440498	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTC	616	0.10846330735613645	No Hit
GAACTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCT	574	0.1010680818545817	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCCCGT	20	7.030268E-4	45.000004	43
CGAAAGG	30	2.1635533E-6	45.000004	2
CGCATAC	20	7.030268E-4	45.000004	32
CGGTGTA	20	7.030268E-4	45.000004	30
CGAATAT	145	0.0	45.000004	14
ACTCGCA	30	2.1635533E-6	45.000004	12
CGTAAGG	40	6.8048394E-9	45.000004	2
CGTAACG	20	7.030268E-4	45.000004	2
TTACGCG	20	7.030268E-4	45.000004	1
TTGCCGC	20	7.030268E-4	45.000004	33
CGATGCG	25	3.8883038E-5	45.000004	10
CGACTCG	20	7.030268E-4	45.000004	30
GCGCTAA	20	7.030268E-4	45.000004	1
CGATCGA	20	7.030268E-4	45.000004	41
TAAGACG	20	7.030268E-4	45.000004	1
GCGTAAG	40	6.8048394E-9	45.000004	1
ATGATCG	45	3.8380676E-10	45.0	27
TACGAAT	160	0.0	42.187504	12
GCTACGA	160	0.0	42.187504	10
GCGAACG	60	3.6379788E-12	41.250004	1