SRR3550916_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550916_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	642247
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGC	3650	0.5683171739221826	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTC	3062	0.4767636127533488	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCG	2768	0.4309868321689319	No Hit
GCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGC	2760	0.4297412054863627	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGC	1737	0.27045669345283047	Illumina Single End Adapter 2 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGCT	1329	0.20692973264180292	Illumina Single End Adapter 2 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1173	0.18264001233170415	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	818	0.12736532829269737	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTCACAGAT	710	0.11054936807801359	No Hit
TCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGC	709	0.11039366474269247	Illumina Single End Adapter 2 (95% over 21bp)
GAACTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCT	677	0.10541115801241578	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	663	0.10323131131791974	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGTACG	30	2.163999E-6	45.000004	1
CCGATGT	30	2.163999E-6	45.000004	11
TTATCGG	25	3.8888757E-5	45.000004	2
CTTGCGG	50	2.1827873E-11	45.000004	2
TATAGCG	30	2.163999E-6	45.000004	1
CGTAACA	30	2.163999E-6	45.000004	18
ACGTAAC	30	2.163999E-6	45.000004	17
CTTTAGC	30	2.163999E-6	45.000004	19
GTACGAG	25	3.8888757E-5	45.000004	1
GACGTAG	20	7.03096E-4	45.0	1
ATCACGG	20	7.03096E-4	45.0	2
TATGATC	20	7.03096E-4	45.0	33
TAACACG	20	7.03096E-4	45.0	1
CCGAACA	20	7.03096E-4	45.0	14
ACGGTCT	40	6.8066583E-9	45.0	30
GCTACGA	145	0.0	43.44828	10
TACGGGA	165	0.0	40.909092	4
ACGGGTC	50	1.0804797E-9	40.500004	5
TACGGGT	45	1.925946E-8	40.0	4
CGGTCTA	45	1.925946E-8	40.0	31