SRR3550910_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550910_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	601001
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

$Per base sequence content$

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGC	7756	1.2905136597110487	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCG	7126	1.185688542947516	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTC	6451	1.0733759178437308	No Hit
GCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGC	3085	0.5133102939928552	TruSeq Adapter, Index 14 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGC	1751	0.2913472689729302	TruSeq Adapter, Index 14 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGCGTGTTT	1731	0.2880194874883736	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCT	1446	0.24059860133344205	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1187	0.1975038311084341	No Hit
GAACTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCT	1117	0.185856595912486	No Hit
CTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGCT	1037	0.1725454699742596	TruSeq Adapter, Index 21 (95% over 22bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTA	1033	0.17187991367734828	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTC	1018	0.16938407756393084	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	604	0.10049900083360926	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGTAG	30	2.163766E-6	45.000004	1
CGACGGT	40	6.8048394E-9	45.0	28
AGGAACG	25	3.8885773E-5	45.0	1
TAACGCG	20	7.030598E-4	45.0	1
TATTGCG	20	7.030598E-4	45.0	1
TAACCGT	20	7.030598E-4	45.0	35
TATAGCG	25	3.8885773E-5	45.0	1
ACCGTAA	20	7.030598E-4	45.0	37
ACGTACG	20	7.030598E-4	45.0	1
CCAACGC	20	7.030598E-4	45.0	32
GACGAAT	25	3.8885773E-5	45.0	20
AGGGCGT	25	3.8885773E-5	45.0	6
CCACCGG	25	3.8885773E-5	45.0	15
AGTCGAT	20	7.030598E-4	45.0	28
TACGGCT	855	0.0	41.842102	7
TGATACC	950	0.0	41.44737	4
ACCACCG	805	0.0	41.36646	14
CCACCGA	745	0.0	41.073826	15
TCACGAC	45	1.9255822E-8	40.000004	25
TACGGGT	45	1.9255822E-8	40.000004	4