SRR3550909_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550909_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	902484
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTC	16721	1.8527752292561421	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGC	15112	1.674489520035812	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCG	13384	1.4830179814822202	No Hit
GCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCTGC	4418	0.4895377646584316	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4217	0.46726590166695475	No Hit
GAACTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCT	3835	0.42493828145429724	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTAGCTGGAT	3041	0.33695888237353794	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCT	2729	0.3023876323569171	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTC	2222	0.24620935107990835	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTAGCTGGATCGTA	2044	0.22648600972427213	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTT	1512	0.16753759623439307	No Hit
CCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCTGC	1330	0.1473710337246976	No Hit
CTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCTGCT	930	0.10304891831877352	Illumina Single End Adapter 2 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCTG	909	0.1007220072599625	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGACA	20	7.032481E-4	45.0	11
TATCTCG	20	7.032481E-4	45.0	20
ACGCGCC	20	7.032481E-4	45.0	24
CGATGAA	1390	0.0	43.057552	19
TACGGCT	1625	0.0	42.923077	7
CCGATGA	1395	0.0	42.580643	18
CGATCGA	155	0.0	42.09677	41
GATACCT	1520	0.0	42.039474	5
GATGAAT	1510	0.0	41.87086	20
TGATACC	1530	0.0	41.76471	4
ACGGCTG	1680	0.0	41.651787	8
ACCACCG	2015	0.0	40.421833	14
CGACCAC	2850	0.0	40.42105	12
CGGCTGT	1735	0.0	40.331413	9
CGTTTTT	2380	0.0	40.27311	1
CACCGAT	1540	0.0	40.032467	16
CCACCGA	1945	0.0	40.025707	15
TTAACGG	45	1.927583E-8	40.000004	2
CGATAAG	45	1.927583E-8	40.000004	10
CGGCGAA	270	0.0	40.0	31