SRR3550905_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550905_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	394649
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTCTGC	1951	0.49436334565652007	No Hit
CCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTCTGC	1916	0.48549470542177986	No Hit
CTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTCTGCT	1173	0.2972261427242942	Illumina Single End Adapter 2 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGC	1158	0.2934252969094056	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTC	1060	0.2685931042521329	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCG	978	0.24781514713074151	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	801	0.20296516651505514	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	654	0.16571687752914616	No Hit
TCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTCTGC	504	0.12770841938025942	No Hit
CGCTGTCTCTTATACACATCTGACGCAGGATCGTTCGTATGCCGTCTTCTG	413	0.10464995476993481	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	408	0.10338300616497191	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTCGTC	70	0.0	45.000004	36
TATTGCG	25	3.8861333E-5	45.000004	1
GCCCCGT	20	7.027651E-4	45.0	16
CCGATTT	20	7.027651E-4	45.0	11
CCTAGTG	20	7.027651E-4	45.0	8
CGACGGT	20	7.027651E-4	45.0	28
ACGTTAT	20	7.027651E-4	45.0	40
GCAACTC	20	7.027651E-4	45.0	38
ACCGATA	40	6.7957444E-9	45.0	10
CACGCAT	20	7.027651E-4	45.0	11
GTTAGAC	20	7.027651E-4	45.0	17
CGATTGA	20	7.027651E-4	45.0	11
TCGATAG	20	7.027651E-4	45.0	1
TACGCAC	20	7.027651E-4	45.0	39
CATAAGA	20	7.027651E-4	45.0	38
CGATAGG	75	0.0	45.0	2
TCCGGTC	20	7.027651E-4	45.0	15
CATATCC	30	2.1618653E-6	44.999996	3
TCGACGG	30	2.1618653E-6	44.999996	2
AAGCTAC	95	0.0	42.63158	8