SRR3550898_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550898_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	794954
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGC	3135	0.39436244109722074	No Hit
GCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGC	2383	0.2997657726107422	No Hit
CTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGCT	1745	0.21950955652779908	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1193	0.15007157646857555	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGC	1157	0.14554301255166965	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1094	0.13761802569708437	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCG	1007	0.1266739962312285	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTC	988	0.12428392083063927	No Hit
TCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGC	799	0.10050896026688337	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTACGT	20	7.0319715E-4	45.000004	9
GTCGCCC	20	7.0319715E-4	45.000004	21
TGTATCG	20	7.0319715E-4	45.000004	1
ACGTAAG	20	7.0319715E-4	45.000004	1
CGCCCAT	20	7.0319715E-4	45.000004	23
GCCGATA	25	3.889716E-5	45.0	9
CATAGCG	25	3.889716E-5	45.0	1
TTGCGCA	25	3.889716E-5	45.0	1
ACGCGTG	25	3.889716E-5	45.0	1
CGTAAGG	75	0.0	42.0	2
CCCTCGT	110	0.0	40.909092	14
TCGTAGG	110	0.0	40.909092	2
CTACGAA	140	0.0	40.17857	11
GCGATAA	40	3.4564255E-7	39.375004	9
ACTCGCG	40	3.4564255E-7	39.375004	1
GCGTAAG	40	3.4564255E-7	39.375004	1
ACGATAG	75	0.0	39.0	1
CATACGA	110	0.0	38.863636	18
TAGCACG	35	6.2458603E-6	38.571426	1
CTCGATC	35	6.2458603E-6	38.571426	16