SRR3550892_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550892_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	537693
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18753	3.487677912861056	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1146	0.2131327727904213	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	986	0.183376015681811	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	982	0.18263209675409575	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	714	0.13278952859717347	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATGG	20	7.029935E-4	45.0	2
TTTCGCG	20	7.029935E-4	45.0	1
TAGCGCG	25	3.8880273E-5	45.0	1
TAGCACG	20	7.029935E-4	45.0	1
TACGCGC	20	7.029935E-4	45.0	34
TACTGCG	20	7.029935E-4	45.0	1
AGCGATT	20	7.029935E-4	45.0	22
CGTAAGG	45	3.8380676E-10	45.0	2
ACGTAAG	20	7.029935E-4	45.0	1
TGCAACG	25	3.8880273E-5	45.0	1
CGACGTT	30	2.1633386E-6	44.999996	27
TCGACGT	30	2.1633386E-6	44.999996	26
CGTTATT	575	0.0	43.826088	1
CGTTTTT	9315	0.0	43.719807	1
CACGCCG	60	3.6379788E-12	41.249996	26
CCCTCGT	115	0.0	41.08696	14
CTAGACG	40	3.4536424E-7	39.375	1
CTGTACG	40	3.4536424E-7	39.375	1
TATTGCG	40	3.4536424E-7	39.375	1
AGTTACG	40	3.4536424E-7	39.375	1