SRR3550890_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550890_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	361637
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11847	3.275936920171332	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	715	0.19771207039102748	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGAAAG	30	2.1613596E-6	45.000004	1
TTAGGCG	20	7.026867E-4	45.0	1
GCGACAA	20	7.026867E-4	45.0	1
ACGTTCA	20	7.026867E-4	45.0	29
TAAACGG	20	7.026867E-4	45.0	2
CGTCTGG	20	7.026867E-4	45.0	2
AAAGTCG	25	3.8854858E-5	45.0	1
AACGGGT	25	3.8854858E-5	45.0	4
CGGGCAC	40	6.7921064E-9	45.0	6
AGCGCAT	20	7.026867E-4	45.0	23
TCGTCAA	20	7.026867E-4	45.0	17
GGTATAC	25	3.8854858E-5	45.0	8
CACGTGA	25	3.8854858E-5	45.0	43
CGACTGG	25	3.8854858E-5	45.0	2
GCCAATC	25	3.8854858E-5	45.0	15
GACTCAC	20	7.026867E-4	45.0	9
GTACGAG	25	3.8854858E-5	45.0	1
GACTACG	20	7.026867E-4	45.0	1
CGTTTTT	6190	0.0	43.945877	1
CGTTATT	425	0.0	43.941177	1