SRR3550887_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550887_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	592204
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17624	2.9760015129921444	No Hit
GCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGC	1249	0.21090705229954546	No Hit
CCTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGC	1110	0.18743541077061282	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1053	0.17781034913644622	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	962	0.16244402266786445	No Hit
CTGTCTCTTATACACATCTGACGCCCTGTTCTTCGTATGCCGTCTTCTGCT	786	0.13272453411324475	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	767	0.12951618023518924	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	662	0.11178580354067179	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	650	0.10975947477558409	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	612	0.10334276701947302	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTTA	20	7.0305134E-4	45.0	6
TCGCAAG	20	7.0305134E-4	45.0	1
CGGCCTA	20	7.0305134E-4	45.0	45
ACGGGCC	25	3.8885075E-5	45.0	5
TCGTGCG	20	7.0305134E-4	45.0	1
AGTTGCG	35	1.210592E-7	45.0	1
GCGATCG	20	7.0305134E-4	45.0	9
GGGTTCG	20	7.0305134E-4	45.0	8
TGCTACG	20	7.0305134E-4	45.0	1
ACACGAC	55	1.8189894E-12	44.999996	26
TATCGAG	30	2.1637134E-6	44.999996	1
CGTTTTT	8550	0.0	43.657894	1
CGTTATT	565	0.0	43.00885	1
TCGTGTA	70	0.0	41.785713	17
GCCCTCG	70	0.0	41.785713	13
AACACGT	70	0.0	41.785713	41
AACGGGC	55	6.002665E-11	40.90909	4
CGTGCGG	45	1.9255822E-8	40.0	2
ACGGGTA	45	1.9255822E-8	40.0	5
TAGGGCG	85	0.0	39.705883	5