SRR3550879_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550879_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	464489
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13188	2.8392491533706936	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1387	0.29860771729793384	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1329	0.286120876920659	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1191	0.2564108084367983	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	752	0.1618983442019079	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	738	0.15888427928325535	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	566	0.12185433885409558	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGTACG	20	7.0289423E-4	45.0	1
CGCGGGT	25	3.8872044E-5	45.0	4
TAGCGAG	20	7.0289423E-4	45.0	1
ATAGCGG	50	2.1827873E-11	45.0	2
ACCCTAT	20	7.0289423E-4	45.0	39
CCGTCAT	20	7.0289423E-4	45.0	35
ATCGTCT	20	7.0289423E-4	45.0	40
AACTCGC	25	3.8872044E-5	45.0	40
GGTTACG	25	3.8872044E-5	45.0	1
TATCGCG	20	7.0289423E-4	45.0	32
GATAGCG	25	3.8872044E-5	45.0	1
CGTTTTT	6720	0.0	43.72768	1
CGTTATT	440	0.0	43.465908	1
CGTTGAT	50	1.0786607E-9	40.5	25
GGTCGTT	45	1.924127E-8	40.0	8
GCGAAAG	45	1.924127E-8	40.0	1
GCTACGG	45	1.924127E-8	40.0	2
CTATGCC	130	0.0	39.807693	9
GCCCTCG	130	0.0	39.807693	13
CGTGTAC	130	0.0	39.807693	18