SRR3550877_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550877_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	393942
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13193	3.3489701529666807	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1035	0.2627290311771784	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1007	0.25562138588929334	No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	826	0.20967553599260802	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	728	0.18479877748501047	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	602	0.1528143736895279	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	581	0.14748363972361414	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	578	0.14672210629991217	No Hit
TAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	427	0.10839159064024655	No Hit
AGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA	412	0.1045839235217367	No Hit
GCACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCA	405	0.10280701219976544	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAT	30	2.1618544E-6	45.000004	6
GCACGTC	20	7.027634E-4	45.0	39
CGCGCGG	35	1.2092096E-7	45.0	2
GCGTTAG	20	7.027634E-4	45.0	1
ACGGGCT	45	3.8380676E-10	45.0	5
GCACCAC	45	3.8380676E-10	45.0	29
CGTTAGG	20	7.027634E-4	45.0	2
TTGCGCG	20	7.027634E-4	45.0	1
CGGGAAT	20	7.027634E-4	45.0	6
GCGATAT	40	6.7957444E-9	45.0	9
ACGTCCC	20	7.027634E-4	45.0	43
AACACGG	20	7.027634E-4	45.0	2
CGTTATT	520	0.0	44.567307	1
CGTTTTT	6780	0.0	43.34071	1
ACATACG	270	0.0	41.666664	17
CTACGAA	65	0.0	41.53846	11
GCTACGA	65	0.0	41.53846	10
CCATCGA	55	6.002665E-11	40.909092	31
CATACGA	270	0.0	40.833332	18
TTGAGCG	50	1.0768417E-9	40.5	1