SRR3550874_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550874_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	190776
Sequences flagged as poor quality	0
Sequence length	51
%GC	33

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13691	7.176479221705036	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	817	0.42825093303140854	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	660	0.34595546609636435	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	395	0.20704910470918775	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCC	268	0.14047888623306914	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	226	0.11846353839057323	No Hit
AGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA	225	0.11793936344194238	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	224	0.11741518849331153	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	207	0.10850421436658698	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	204	0.10693168952069443	No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	203	0.10640751457206357	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCAAG	20	7.018482E-4	45.000004	39
ATGGGCG	20	7.018482E-4	45.000004	5
AGATCAG	20	7.018482E-4	45.000004	44
GATCAGG	20	7.018482E-4	45.000004	2
ATCACGG	20	7.018482E-4	45.000004	2
CGGGGCT	20	7.018482E-4	45.000004	6
ATATCAT	20	7.018482E-4	45.000004	26
CACTATC	20	7.018482E-4	45.000004	36
AATTGCA	20	7.018482E-4	45.000004	41
GGAGTTC	40	6.7630026E-9	45.000004	8
CGGGAGT	40	6.7630026E-9	45.000004	6
TATAGCG	20	7.018482E-4	45.000004	1
TGGGCTC	20	7.018482E-4	45.000004	6
AGCTATG	20	7.018482E-4	45.000004	1
AATACGG	20	7.018482E-4	45.000004	2
GGGATAC	20	7.018482E-4	45.000004	7
CGAAGGA	20	7.018482E-4	45.000004	2
CTCACTA	25	3.87854E-5	45.0	45
GGGTCAT	25	3.87854E-5	45.0	7
GGCAATG	35	1.2048076E-7	45.0	1