SRR3550871_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550871_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	430829
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10597	2.4596765770177957	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1164	0.2701767986834684	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	916	0.2126133570395679	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	870	0.20193626705723153	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	719	0.1668875586369534	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	714	0.1657270053780038	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	620	0.1439086041097512	No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	467	0.10839567438589325	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACCCG	20	7.02837E-4	45.000004	45
GGATGCG	20	7.02837E-4	45.000004	40
CCGATGC	20	7.02837E-4	45.000004	11
GCGCGAC	20	7.02837E-4	45.000004	9
TAGCGAG	40	6.7975634E-9	45.000004	1
CGCGACC	20	7.02837E-4	45.000004	10
AATAGCG	20	7.02837E-4	45.000004	1
TATACGG	40	6.7975634E-9	45.000004	2
AAATGCG	20	7.02837E-4	45.000004	1
ACAACGG	25	3.886732E-5	45.0	2
TTGTGCG	45	3.8380676E-10	45.0	1
CGGGCTA	35	1.2095552E-7	45.0	6
GTATACG	35	1.2095552E-7	45.0	1
GCTACGA	90	0.0	45.0	10
ATAAGCG	30	2.162331E-6	44.999996	1
CGTAAGG	30	2.162331E-6	44.999996	2
CGTTATT	385	0.0	43.831165	1
CGTTTTT	5670	0.0	43.293648	1
TACGAAT	90	0.0	42.5	12
GCACGGG	145	0.0	41.89655	3