SRR3550870_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550870_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	740292
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18647	2.518870932010612	No Hit
GAATCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTC	5792	0.7823939742696125	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCG	5205	0.7031009385485727	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGC	2910	0.39308813279084465	No Hit
GAACTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCT	1957	0.2643551463476574	No Hit
GCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTGC	1146	0.15480378013000276	TruSeq Adapter, Index 22 (95% over 23bp)
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1016	0.13724314189536022	No Hit
GAATGACTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCT	934	0.12616643162427799	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	901	0.12170873114933027	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	855	0.11549496685091828	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	837	0.11306349386458316	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	806	0.10887595705478378	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACCCG	20	7.0316566E-4	45.000004	32
CGTAAGG	80	0.0	45.000004	2
TACGTAG	20	7.0316566E-4	45.000004	1
TAGTACG	20	7.0316566E-4	45.000004	1
CGAATAC	25	3.8894555E-5	45.0	45
GTATACG	25	3.8894555E-5	45.0	1
GTACCGG	30	2.16445E-6	44.999996	2
CGTTATT	785	0.0	44.426754	1
CGTTTTT	10530	0.0	43.653847	1
CGATGAA	1165	0.0	43.648067	19
CCGATGA	1155	0.0	42.66234	18
ACCACCG	1495	0.0	42.591972	14
CCACCGA	1460	0.0	41.301373	15
GATGAAT	1315	0.0	41.06464	20
CTACGAA	110	0.0	40.909092	11
GCTACGA	110	0.0	40.909092	10
CGACCAC	1885	0.0	40.225464	12
TGATACC	685	0.0	40.072994	4
TTGTGCG	45	1.9266736E-8	40.0	1
TACGGCT	395	0.0	39.873417	7