SRR3550867_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550867_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	262973
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17562	6.678252139953532	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1080	0.4106885497750719	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	419	0.15933194662569922	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCC	387	0.14716339700273412	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	364	0.13841725196122795	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	297	0.11293935118814478	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	286	0.10875641225525053	No Hit
CCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC	270	0.10267213744376798	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTTGCG	30	2.159095E-6	45.000004	14
ACGGGAC	60	0.0	45.000004	5
CGGGAAC	30	2.159095E-6	45.000004	6
AACTGAT	30	2.159095E-6	45.000004	33
CGTAAGG	30	2.159095E-6	45.000004	2
CAATAAG	30	2.159095E-6	45.000004	1
GCGACAG	20	7.0233556E-4	45.0	1
ACCATAA	25	3.8825747E-5	45.0	28
CTATACG	25	3.8825747E-5	45.0	45
TGAACGG	20	7.0233556E-4	45.0	2
TTCGTAG	25	3.8825747E-5	45.0	1
TTGTAGT	20	7.0233556E-4	45.0	30
AGGGTCC	20	7.0233556E-4	45.0	6
CGACAAT	20	7.0233556E-4	45.0	20
ACGGGCG	25	3.8825747E-5	45.0	5
TCGGCAG	20	7.0233556E-4	45.0	1
TATGACG	25	3.8825747E-5	45.0	1
TGGTTGA	20	7.0233556E-4	45.0	14
GTTACGG	20	7.0233556E-4	45.0	2
CAGATAG	20	7.0233556E-4	45.0	45