##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3550867_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 262973 Sequences flagged as poor quality 0 Sequence length 51 %GC 34 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.14476391112395 33.0 31.0 34.0 30.0 34.0 2 32.28104406155765 34.0 31.0 34.0 30.0 34.0 3 31.915036904929405 33.0 31.0 34.0 30.0 34.0 4 35.84058059192389 37.0 35.0 37.0 35.0 37.0 5 33.761534454107455 37.0 35.0 37.0 32.0 37.0 6 34.784282036558885 37.0 35.0 37.0 32.0 37.0 7 35.872983157966786 37.0 35.0 37.0 33.0 37.0 8 35.89942313469444 37.0 35.0 37.0 35.0 37.0 9 37.91866845645751 39.0 38.0 39.0 35.0 39.0 10 37.67441524415054 39.0 37.0 39.0 35.0 39.0 11 37.57972111205333 39.0 37.0 39.0 35.0 39.0 12 37.54489244142935 39.0 37.0 39.0 35.0 39.0 13 37.506352363170365 39.0 37.0 39.0 35.0 39.0 14 38.77313260296685 40.0 38.0 41.0 35.0 41.0 15 38.90194050339769 40.0 38.0 41.0 35.0 41.0 16 38.866377917124574 40.0 38.0 41.0 35.0 41.0 17 38.82324040871116 40.0 38.0 41.0 35.0 41.0 18 38.32893490966753 39.0 38.0 41.0 35.0 41.0 19 37.73091534111867 38.0 37.0 41.0 34.0 41.0 20 37.220231734816885 38.0 35.0 41.0 34.0 41.0 21 37.0642727580398 37.0 35.0 41.0 33.0 41.0 22 37.05771695193042 38.0 35.0 41.0 34.0 41.0 23 37.06852034239257 38.0 35.0 41.0 34.0 41.0 24 36.938358690816166 37.0 35.0 41.0 33.0 41.0 25 36.73129180562263 37.0 35.0 40.0 33.0 41.0 26 36.76926528578979 37.0 35.0 40.0 33.0 41.0 27 36.73978697432816 37.0 35.0 41.0 33.0 41.0 28 36.55364238914261 37.0 35.0 40.0 33.0 41.0 29 36.42445802420781 37.0 35.0 41.0 33.0 41.0 30 36.01177307176022 37.0 35.0 40.0 32.0 41.0 31 35.522821734550696 37.0 35.0 40.0 30.0 41.0 32 34.74718697356763 37.0 35.0 40.0 22.0 41.0 33 33.76968357968308 37.0 34.0 40.0 16.0 41.0 34 32.92695828088815 36.0 33.0 40.0 12.0 41.0 35 32.391139014271424 36.0 32.0 40.0 10.0 41.0 36 32.0376502530678 36.0 31.0 40.0 8.0 41.0 37 31.833686348028124 36.0 30.0 40.0 7.0 41.0 38 31.669414730789853 36.0 30.0 40.0 7.0 41.0 39 31.530784529210223 36.0 29.0 40.0 7.0 41.0 40 31.416343122677993 36.0 28.0 40.0 7.0 41.0 41 31.24181189703886 36.0 26.0 40.0 7.0 41.0 42 31.097960627136626 35.0 25.0 40.0 7.0 41.0 43 30.918105661037444 35.0 24.0 40.0 7.0 41.0 44 30.732501055241414 35.0 23.0 40.0 7.0 41.0 45 30.714073307906133 35.0 23.0 40.0 7.0 41.0 46 30.603784418932744 35.0 23.0 40.0 7.0 41.0 47 30.575903229609125 35.0 23.0 40.0 7.0 41.0 48 30.5185323208086 35.0 23.0 40.0 7.0 41.0 49 30.400607666946797 35.0 23.0 40.0 7.0 41.0 50 30.29715217912105 35.0 23.0 40.0 7.0 41.0 51 29.581291615489043 35.0 22.0 39.0 7.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 2.0 9 5.0 10 5.0 11 7.0 12 8.0 13 8.0 14 5.0 15 25.0 16 33.0 17 72.0 18 154.0 19 326.0 20 558.0 21 803.0 22 1311.0 23 2376.0 24 4144.0 25 7532.0 26 11708.0 27 13091.0 28 11561.0 29 9401.0 30 7882.0 31 7102.0 32 7058.0 33 8401.0 34 13569.0 35 21220.0 36 17218.0 37 20043.0 38 35185.0 39 62104.0 40 55.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.908085620957284 15.890224471713827 18.501519167366993 38.7001707399619 2 52.31753830241127 17.788137945720663 18.083985808429002 11.81033794343906 3 21.3139751989748 17.08540420499443 49.799409064808934 11.801211531221837 4 20.63824042772452 18.62244412924521 48.309902537522866 12.42941290550741 5 16.38343099861963 27.065516231704397 44.87266753621094 11.678385233465033 6 18.392382487936025 24.648157795667235 47.51894681203013 9.440512904366608 7 56.15405383822674 4.422507253596377 36.569153487240136 2.8542854209367503 8 56.3468492963156 4.616063246036665 36.40715967038442 2.6299277872633313 9 52.05249208093606 6.949002369064505 37.49396325858548 3.504542291413947 10 28.154601422959775 22.355907260441185 41.85943043582421 7.630060880774832 11 21.518178672335182 18.802690770535378 48.685606507131915 10.993524049997529 12 20.809360656797466 17.040152411084026 49.5917831868671 12.558703745251416 13 17.117346647754715 19.957181916014193 50.15914181303784 12.766329623193256 14 12.775836302586196 22.42967909253041 50.42494856886448 14.369536036018907 15 13.351180539447016 20.660676191091863 54.15689063135759 11.831252638103532 16 15.000399280534504 19.72864134340788 53.09632547828104 12.174633897776578 17 14.582105387245079 19.797849969388494 50.65881288193085 14.961231761435585 18 15.281036456214137 19.96744912975857 51.48513345476532 13.266380959261978 19 16.15907336494621 19.952998977081297 50.27626410315887 13.611663554813614 20 17.60827157160621 20.148076038224456 50.622307233061946 11.621345157107383 21 16.516904777296528 20.719997870503818 49.90094040072555 12.862156951474105 22 15.570039509759557 19.003852106490022 50.68505131705536 14.74105706669506 23 14.6988474101904 20.414643328402533 50.95123834005773 13.93527092134934 24 15.446072410475601 19.63243374795131 51.39881280587741 13.52268103569568 25 14.368395234491754 21.7102135960726 49.416099751685536 14.50529141775011 26 14.624695310925457 22.38290622991714 49.53246150745514 13.459936951702268 27 14.90229034919935 21.961570199221974 50.543211660512675 12.592927791066003 28 13.516596760884198 22.215208405425653 51.11627429431918 13.151920539370963 29 14.284356188658151 21.10254664927578 50.23633604970853 14.376761112357542 30 15.566617105178098 21.144376038604722 49.04952219429371 14.239484661923468 31 16.42716172382716 22.815650275883836 47.10369505614645 13.653492944142553 32 16.45301989177596 23.905876268666365 46.27167047567621 13.369433363881464 33 16.464808174223208 24.298311994006987 44.20301703977214 15.033862791997658 34 15.65750096017462 25.17216596380617 43.75582284112818 15.414510234891035 35 16.94394481562746 25.728877109056825 40.66006776361071 16.667110311705006 36 18.23913481612181 27.12788004852209 39.05914295383936 15.573842181516733 37 17.157274701205065 28.012761766417082 39.913983564852664 14.915979967525184 38 16.881580998809763 28.818547911762803 38.2480330680336 16.05183802139383 39 17.844417487726876 26.48294691850494 38.709297152179126 16.96333844158906 40 18.00184809847399 26.296996269579004 39.878618717510925 15.822536914436084 41 16.966000311819084 27.189103063812638 38.49824886965582 17.34664775471246 42 18.420141991763415 27.06969917063729 37.71679982355603 16.793359014043265 43 19.011837717180093 27.14917501036228 37.1197803576793 16.719206914778322 44 16.705517296452488 28.445505812383782 36.63798184604503 18.2109950451187 45 17.08084099888582 27.816163636571055 36.68399417430687 18.41900119023626 46 17.308621037140696 28.07740718628909 37.07528909812034 17.53868267844988 47 17.05308149505843 27.14118939967221 38.61308955672255 17.192639548546808 48 17.287706342476223 25.731158712111128 38.948865472881245 18.0322694725314 49 16.90667863240713 26.357458750518113 38.798659938472774 17.937202678601984 50 16.042711609176607 25.833830849554897 39.16942043479749 18.954037106471006 51 16.179607792434965 25.616698292220114 37.9076939457663 20.295999969578627 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 361.0 1 735.0 2 1109.0 3 14845.5 4 28582.0 5 18470.5 6 8359.0 7 8004.5 8 7650.0 9 7402.5 10 7155.0 11 7068.5 12 6982.0 13 6537.0 14 6092.0 15 5608.5 16 5125.0 17 4742.0 18 4359.0 19 4106.5 20 3854.0 21 3648.5 22 3443.0 23 3373.5 24 3304.0 25 3332.0 26 3549.0 27 3738.0 28 4315.5 29 4893.0 30 5302.5 31 5712.0 32 6324.0 33 6936.0 34 7246.0 35 7556.0 36 7474.5 37 7393.0 38 8488.0 39 9583.0 40 10285.5 41 10988.0 42 11335.0 43 11682.0 44 12532.5 45 13383.0 46 14200.0 47 15017.0 48 14856.0 49 14695.0 50 13831.0 51 12967.0 52 11361.5 53 9756.0 54 8659.5 55 7563.0 56 6849.0 57 6135.0 58 6048.0 59 5961.0 60 5923.0 61 5885.0 62 5381.5 63 4878.0 64 4052.0 65 3226.0 66 2594.0 67 1962.0 68 1599.0 69 1236.0 70 1007.5 71 779.0 72 683.5 73 588.0 74 467.0 75 277.5 76 209.0 77 133.0 78 57.0 79 68.0 80 79.0 81 50.5 82 22.0 83 15.5 84 9.0 85 6.5 86 4.0 87 2.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 262973.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.168151141285485 #Duplication Level Percentage of deduplicated Percentage of total 1 79.58373524876751 31.171477706117752 2 7.913201770862691 6.198909659452757 3 2.7039573690644096 3.1772703273332237 4 1.5552732159640572 2.4366870555549336 5 1.0144898167894956 1.9867845237652992 6 0.7995956429576062 1.8791209797166117 7 0.7116399649435443 1.9511535193561493 8 0.5727102427095822 1.7945601077288966 9 0.48875271954709987 1.7229186350941612 >10 4.469738571697548 34.103688698032656 >50 0.14892465276884304 3.6462767928612063 >100 0.035981795299854694 2.6331176410548074 >500 0.0 0.0 >1k 9.994943138848526E-4 0.42280211899185133 >5k 0.0 0.0 >10k+ 9.994943138848526E-4 6.875232234939715 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 17562 6.678252139953532 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1080 0.4106885497750719 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 419 0.15933194662569922 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCC 387 0.14716339700273412 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 364 0.13841725196122795 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 297 0.11293935118814478 No Hit GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 286 0.10875641225525053 No Hit CCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC 270 0.10267213744376798 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.07529290079209652 0.0 2 0.0 0.0 0.0 0.3684788932704118 0.0 3 0.0 0.0 0.0 0.5217265650846284 0.0 4 0.0 0.0 0.0 0.6890441224003985 0.0 5 0.0 0.0 0.0 1.2008837409163677 0.0 6 0.0 0.0 0.0 1.449578473835717 0.0 7 0.0 0.0 0.0 1.7188076342438197 0.0 8 0.0 0.0 0.0 2.1374817947089624 0.0 9 0.0 0.0 0.0 2.2971940085103792 0.0 10 0.0 0.0 0.0 2.6755598483494505 0.0 11 0.0 0.0 0.0 3.3680263753313078 0.0 12 0.0 0.0 0.0 3.863514505291418 0.0 13 3.802671757176592E-4 0.0 0.0 4.023606986268552 0.0 14 3.802671757176592E-4 0.0 0.0 4.082928665680507 0.0 15 3.802671757176592E-4 0.0 0.0 4.214501108478817 0.0 16 3.802671757176592E-4 0.0 0.0 4.457491833762401 0.0 17 3.802671757176592E-4 0.0 0.0 4.7951690857996825 0.0 18 3.802671757176592E-4 0.0 0.0 5.149958360744259 0.0 19 3.802671757176592E-4 0.0 0.0 5.369372521133348 0.0 20 3.802671757176592E-4 0.0 0.0 5.596772292212509 0.0 21 3.802671757176592E-4 0.0 0.0 5.88881748316367 0.0 22 3.802671757176592E-4 0.0 0.0 6.196833895494975 0.0 23 3.802671757176592E-4 0.0 0.0 6.519300460503549 0.0 24 3.802671757176592E-4 0.0 0.0 6.7455594300555575 0.0 25 3.802671757176592E-4 0.0 0.0 6.956607712578858 0.0 26 3.802671757176592E-4 0.0 0.0 7.144459697383382 0.0 27 3.802671757176592E-4 0.0 0.0 7.352085575325224 0.0 28 3.802671757176592E-4 0.0 0.0 7.560091720442783 0.0 29 3.802671757176592E-4 0.0 0.0 7.798138972442038 0.0 30 3.802671757176592E-4 0.0 0.0 8.073452407661623 0.0 31 3.802671757176592E-4 0.0 0.0 8.321006339053818 0.0 32 7.605343514353184E-4 0.0 0.0 8.55334958341731 0.0 33 7.605343514353184E-4 0.0 0.0 8.784552026253646 0.0 34 7.605343514353184E-4 0.0 0.0 9.02754275153723 0.0 35 7.605343514353184E-4 0.0 0.0 9.300954850878227 0.0 36 7.605343514353184E-4 0.0 0.0 9.550410118149012 0.0 37 7.605343514353184E-4 0.0 0.0 9.797964049541207 0.0 38 7.605343514353184E-4 0.0 0.0 10.058066797732087 0.0 39 0.001521068702870637 0.0 0.0 10.301437790191388 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACTTGCG 30 2.159095E-6 45.000004 14 ACGGGAC 60 0.0 45.000004 5 CGGGAAC 30 2.159095E-6 45.000004 6 AACTGAT 30 2.159095E-6 45.000004 33 CGTAAGG 30 2.159095E-6 45.000004 2 CAATAAG 30 2.159095E-6 45.000004 1 GCGACAG 20 7.0233556E-4 45.0 1 ACCATAA 25 3.8825747E-5 45.0 28 CTATACG 25 3.8825747E-5 45.0 45 TGAACGG 20 7.0233556E-4 45.0 2 TTCGTAG 25 3.8825747E-5 45.0 1 TTGTAGT 20 7.0233556E-4 45.0 30 AGGGTCC 20 7.0233556E-4 45.0 6 CGACAAT 20 7.0233556E-4 45.0 20 ACGGGCG 25 3.8825747E-5 45.0 5 TCGGCAG 20 7.0233556E-4 45.0 1 TATGACG 25 3.8825747E-5 45.0 1 TGGTTGA 20 7.0233556E-4 45.0 14 GTTACGG 20 7.0233556E-4 45.0 2 CAGATAG 20 7.0233556E-4 45.0 45 >>END_MODULE