SRR3550865_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550865_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	440555
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15171	3.443610899887642	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCG	1787	0.4056247233603069	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTC	1540	0.3495590788891285	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGC	1326	0.3009839861084314	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	843	0.1913495477295684	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	566	0.12847431081249786	No Hit
GCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGC	481	0.10918046554913689	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGCTC	20	7.028546E-4	45.0	9
CGGCGAG	80	0.0	45.0	31
TCGTTGG	25	3.8868762E-5	45.0	2
CCCTCGA	20	7.028546E-4	45.0	41
ATCAGCG	20	7.028546E-4	45.0	1
GCGTTAG	25	3.8868762E-5	45.0	1
TATTGCG	20	7.028546E-4	45.0	1
TTAAGCG	25	3.8868762E-5	45.0	1
TACGAAT	25	3.8868762E-5	45.0	12
TCGCTCA	20	7.028546E-4	45.0	10
AGCGCGC	20	7.028546E-4	45.0	20
CGAGCCC	20	7.028546E-4	45.0	34
CTCGAAG	20	7.028546E-4	45.0	32
GCTAACG	20	7.028546E-4	45.0	13
GGTTACG	20	7.028546E-4	45.0	1
TCGAAGG	20	7.028546E-4	45.0	2
ACGGGTC	30	2.162442E-6	44.999996	5
CGAATGC	65	0.0	44.999996	45
TAGTGCG	30	2.162442E-6	44.999996	1
CGTTTTT	9075	0.0	44.10744	1