SRR3550860_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550860_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	418986
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGC	7871	1.8785830552810836	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTC	6707	1.600769476784427	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCG	6448	1.5389535688543292	No Hit
GCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC	3116	0.7437002668346914	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCTTAACAT	1466	0.3498923591719055	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCT	1447	0.3453576014473037	No Hit
CCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC	1307	0.3119435971607643	No Hit
GAACTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCT	1183	0.282348336221258	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCTTAACATCGTA	1129	0.26946007742502137	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTC	1113	0.2656413340779883	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	931	0.22220312850548704	No Hit
CTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGCT	785	0.18735709546381024	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTT	531	0.12673454482966018	No Hit
TCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC	434	0.10358341328827216	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGAC	75	0.0	45.000004	26
TTAGGCG	25	3.886547E-5	45.0	1
TCGTTGA	20	7.028148E-4	45.0	24
CGACGTT	20	7.028148E-4	45.0	27
CACGGAC	20	7.028148E-4	45.0	18
CGACGGT	20	7.028148E-4	45.0	28
GCGAACC	35	1.2094642E-7	45.0	33
ATGTGCG	20	7.028148E-4	45.0	1
TAACGCA	20	7.028148E-4	45.0	9
GCGCAGA	20	7.028148E-4	45.0	10
GTTAACG	20	7.028148E-4	45.0	1
CGAATGG	35	1.2094642E-7	45.0	2
CATCGAA	20	7.028148E-4	45.0	42
CCCGGTC	20	7.028148E-4	45.0	4
CGCGAGG	105	0.0	42.857143	2
GACACGA	80	0.0	42.1875	25
AACACGT	80	0.0	42.1875	41
TACGGCT	890	0.0	41.96629	7
TCGATGG	60	3.6379788E-12	41.250004	2
AGTACGG	60	3.6379788E-12	41.250004	2