SRR3550857_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550857_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	671797
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTC	11634	1.7317731398026486	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGC	11244	1.6737198885972995	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCG	9936	1.4790182153239744	No Hit
GCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGC	4215	0.6274216764885822	TruSeq Adapter, Index 19 (95% over 21bp)
GAACTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCT	2507	0.3731782071072065	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCATGTGCTTT	2211	0.32911727798724916	No Hit
GAATGACTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCT	2171	0.3231630983764441	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTC	1755	0.26123963042407156	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCATGTGCTTTCGTA	1738	0.25870910408947945	No Hit
CCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGC	1728	0.25722055918677816	TruSeq Adapter, Index 19 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1553	0.23117102338950607	No Hit
CTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGCT	1173	0.1746063170868581	TruSeq Adapter, Index 13 (95% over 22bp)
GAATGCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTT	875	0.13024767898636044	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGCGAA	25	3.8890692E-5	45.0	31
GTACACG	25	3.8890692E-5	45.0	1
CGTGCGG	80	0.0	45.0	2
GCGAACC	40	6.8084773E-9	45.0	33
TACGGGT	35	1.2109194E-7	45.0	4
TAACGCG	25	3.8890692E-5	45.0	1
TATTGCG	20	7.0311903E-4	45.0	1
CCCGTTA	20	7.0311903E-4	45.0	19
GGACGTA	25	3.8890692E-5	45.0	8
CGATAGC	20	7.0311903E-4	45.0	10
CCGTTAG	20	7.0311903E-4	45.0	20
TAACGCC	30	2.16415E-6	44.999996	12
ACGGCCT	60	3.6379788E-12	41.249996	8
ACACGAC	330	0.0	40.909092	26
ACGGCTG	1335	0.0	40.78652	8
TACGGCT	1335	0.0	40.617977	7
AAGCACG	50	1.0804797E-9	40.5	1
CGGCTAT	50	1.0804797E-9	40.5	31
CGATGAA	590	0.0	40.42373	19
CCGATGA	590	0.0	40.042374	18