SRR3550851_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550851_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	837741
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTC	4598	0.5488569856315973	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGC	4118	0.4915600406330835	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCG	3266	0.3898579632607214	No Hit
GCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGC	2412	0.28791714861753215	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1632	0.19480961299494712	No Hit
CCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGC	1263	0.1507625865273396	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1117	0.1333347657569583	No Hit
GAACTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCT	1108	0.13226044803823617	No Hit
CTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGCT	872	0.10408945008063351	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGCGAA	20	7.03219E-4	45.0	31
AAATCGT	20	7.03219E-4	45.0	12
GGCCGTA	20	7.03219E-4	45.0	28
CGAATAT	140	0.0	41.785717	14
TACGGCT	475	0.0	41.21053	7
TACGTAG	50	1.0804797E-9	40.5	1
GTGCAAG	180	0.0	40.0	1
CGGGTTA	35	6.2462586E-6	38.57143	6
ATAGCGG	140	0.0	38.57143	2
CGACAGG	95	0.0	37.894737	2
TACGAAT	155	0.0	37.741936	12
CGAGTGA	30	1.1396578E-4	37.499996	23
AATAGCG	30	1.1396578E-4	37.499996	1
CGTTTTT	1150	0.0	37.173916	1
AAGGGCG	280	0.0	36.964287	5
CTACGAA	165	0.0	36.818184	11
TTAAGCG	55	2.746674E-9	36.81818	1
TATAGCG	55	2.746674E-9	36.81818	1
ATAGGGA	460	0.0	36.68478	4
GCTACGA	160	0.0	36.5625	10