SRR3550843_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550843_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	597568
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGC	8152	1.364196208632323	No Hit
GAATCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTC	7614	1.2741646139016813	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCG	6956	1.1640516225768447	No Hit
GCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGC	2919	0.4884799721537967	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCACTTCCGT	1626	0.2721029238513441	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1458	0.24398896861947095	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCT	1416	0.23696047981150264	No Hit
GAACTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCT	1356	0.22691978151440506	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCACTTCCGTCGTA	1143	0.19127530255970868	No Hit
CCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGC	1137	0.19027123272999893	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTC	1104	0.18474884866659527	No Hit
CTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGCT	794	0.1328719074649245	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCGATA	20	7.030566E-4	45.0	9
TACACGA	20	7.030566E-4	45.0	10
CGACAAT	30	2.163746E-6	44.999996	21
CGGTCTA	30	2.163746E-6	44.999996	31
ACAACGA	100	0.0	42.75	13
CCGATGA	510	0.0	42.35294	18
CCCGTCG	65	0.0	41.538464	40
TACGGCT	925	0.0	40.62162	7
GCGTATG	50	1.0804797E-9	40.5	1
CGACCAC	1130	0.0	40.221237	12
CGATGAA	545	0.0	39.63303	19
TGATACC	895	0.0	38.96648	4
CGACAGG	110	0.0	38.863636	2
CACAACG	110	0.0	38.863636	12
CGTTCAT	35	6.2432555E-6	38.571426	17
GCGTAAG	35	6.2432555E-6	38.571426	1
TCAACGG	35	6.2432555E-6	38.571426	2
GATACCT	900	0.0	38.5	5
ACGGCTG	980	0.0	38.341835	8
CCACCGA	735	0.0	38.265305	15