SRR3550834_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550834_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	456725
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTC	5768	1.2629043735289287	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGC	5334	1.1678800153265094	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCG	4470	0.9787070994580984	No Hit
GCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCTGC	2210	0.48387979637637524	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1474	0.3227324976736548	No Hit
GAACTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCT	1397	0.3058733373474191	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCAGCGTAGT	1146	0.2509168536865729	No Hit
CCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCTGC	996	0.21807433357052933	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCT	987	0.21610378236356667	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTC	866	0.18961081613662487	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTA	806	0.17647380809020746	No Hit
CTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCTGCT	796	0.1742843067491379	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	623	0.1364059335486343	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	559	0.12239312496578904	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTT	486	0.10640976517598116	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGAACC	60	0.0	45.000004	33
ACGGGTC	35	1.2097735E-7	45.000004	5
TTACGTG	30	2.1626183E-6	45.000004	23
GCGTAAG	30	2.1626183E-6	45.000004	1
CTCGTAC	20	7.0288166E-4	45.0	29
TTTACGA	20	7.0288166E-4	45.0	45
TAACGTA	20	7.0288166E-4	45.0	27
CGTTCGG	20	7.0288166E-4	45.0	45
GCACCGA	50	2.1827873E-11	45.0	9
TCTACGG	20	7.0288166E-4	45.0	2
CGTAGCA	20	7.0288166E-4	45.0	16
CGTACAC	20	7.0288166E-4	45.0	30
CGATGAA	425	0.0	42.88235	19
CCGATGA	420	0.0	42.857147	18
CGTAAGG	65	0.0	41.538464	2
TACGGCT	565	0.0	41.415928	7
GGCCGAT	50	1.0786607E-9	40.5	8
CGATAGG	50	1.0786607E-9	40.5	2
ATAGGGC	125	0.0	39.6	4
TTGTGCG	40	3.4521145E-7	39.375	1