SRR3550830_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550830_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	913042
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTC	11987	1.312864030351287	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10429	1.142225658841543	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGC	5291	0.5794914144146709	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCG	4532	0.496362708396766	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTT	4312	0.4722674312901269	No Hit
GAACTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCT	4307	0.47171981135588503	No Hit
GCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC	3488	0.3820196661270785	No Hit
CGTTCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTC	3456	0.378514898547931	No Hit
CGCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTG	3116	0.3412767430194887	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCT	2738	0.29987667599080875	No Hit
GAATGCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTT	1961	0.21477653820963327	No Hit
CGTCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCT	1880	0.20590509527491616	No Hit
CCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC	1778	0.19473364861638348	No Hit
CTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGCT	1556	0.17041932353604763	No Hit
GAATGACTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCT	1309	0.1433668987845028	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTC	1286	0.14084784708699052	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTC	1181	0.12934782846791276	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACGAGTCTT	1010	0.11061922671684325	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAGTAG	20	7.032524E-4	45.0	1
TGCATCG	20	7.032524E-4	45.0	1
CTCGACG	20	7.032524E-4	45.0	1
CGTTTTT	7525	0.0	44.19269	1
CGTTTCT	475	0.0	41.210526	1
CGAACGG	45	1.927583E-8	40.0	2
TGCGACG	45	1.927583E-8	40.0	1
CGTTCTG	375	0.0	39.6	1
TACGGCT	685	0.0	39.416058	7
CGTTTTC	350	0.0	39.214287	1
TACGGGA	250	0.0	38.699997	4
AAGGGCG	180	0.0	37.5	5
CGATGAA	360	0.0	37.5	19
AGGTACG	30	1.139738E-4	37.499996	1
TTGTGCG	30	1.139738E-4	37.499996	1
TAGCCGT	30	1.139738E-4	37.499996	44
CTGCGCG	30	1.139738E-4	37.499996	1
CGAATAT	30	1.139738E-4	37.499996	14
GTAGGGC	405	0.0	37.22222	4
GTTTTTT	8890	0.0	37.1288	2