SRR3550821_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3550821_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	382933
Sequences flagged as poor quality	0
Sequence length	51
%GC	35

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	27618	7.21222772652135	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGC	5596	1.4613522469988223	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTC	5050	1.3187685574238837	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCG	4960	1.2952657514499926	No Hit
GCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCTGC	1442	0.37656718015945345	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTAAGTCGT	1318	0.3441855363732037	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCT	1008	0.2632314269075791	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTA	855	0.22327665675196443	No Hit
GAATGATACGGCGACCACCGATGAATGATACGGCGACCACCCGTCGAATGC	808	0.21100296918782138	No Hit
GAACTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTCTTCT	758	0.19794585475788196	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTAAGTCGTCGTATGCCGTC	680	0.1775767562471764	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	574	0.14989567365570478	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	565	0.14754539305831568	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	485	0.1266540099704126	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA	434	0.11333575325187435	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAA	384	0.10027863882193491	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGCACGG	45	3.8380676E-10	45.000004	2
ATCGAAT	35	1.2090823E-7	45.000004	43
AAATCGT	40	6.7939254E-9	45.0	45
CCTAGTC	20	7.0273876E-4	45.0	29
ACTGACG	50	2.1827873E-11	45.0	43
CTATCGG	20	7.0273876E-4	45.0	18
ACCGCCG	20	7.0273876E-4	45.0	39
CTATACG	20	7.0273876E-4	45.0	32
CGACAAT	25	3.885917E-5	45.0	20
ACGGGTA	25	3.885917E-5	45.0	5
CGTTAGG	25	3.885917E-5	45.0	2
ATCCGGG	25	3.885917E-5	45.0	3
ATCCGGC	50	2.1827873E-11	45.0	6
GCCGATC	20	7.0273876E-4	45.0	9
TCATCGA	25	3.885917E-5	45.0	16
CTCGAGG	25	3.885917E-5	45.0	2
CATCGAA	40	6.7939254E-9	45.0	42
ATACGTA	20	7.0273876E-4	45.0	34
CACCGCG	25	3.885917E-5	45.0	38
TATACGT	20	7.0273876E-4	45.0	33